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[176266_s_at]

Description Y71H2AM.L /REP_DB=WormBase Gene ID /WP=CE26266 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 65      6grp_total > 81      4grp_total > 59      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1858
1 2 3 4 range
A 1132.5
(0.2)
P 		1485.7
(1.5)
P 		1870.6
(3)
P 		281.1
(-3)
P 		1590
B 1040.5
(-0.7)
P 		1450.1
(0.7)
P 		2139.2
(3)
P 		370
(-3)
P 		1769
C 1246.4
(0.1)
P 		1669.1
(1.6)
P 		2029.4
(3)
P 		436.1
(-3)
P 		1593
avr 1139.8
(-0.2) 		1535
(1.3) 		2013.1
(3) 		362.4
(-3) 		1651

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 861
1 2 3 4 5 6 range
A 820.2
(-2.6)
P 		772.4
(-3)
P 		921.3
(-1.7)
P 		1466.8
(3)
P 		1077.8
(-0.4)
P 		937.5
(-1.6)
P 		694
B 839.1
(-1)
P 		647
(-3)
P 		1016.7
(0.9)
P 		1212.2
(3)
P 		1052.5
(1.3)
P 		779.4
(-1.6)
P 		565
C 1088.2
(0.7)
P 		605.7
(-3)
P 		923.8
(-0.6)
P 		1391.2
(3)
P 		1216.8
(1.7)
P 		843
(-1.2)
P 		786
avr 915.8
(-0.9) 		675
(-3) 		953.9
(-0.5) 		1356.7
(3) 		1115.7
(0.9) 		853.3
(-1.4) 		682
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 412.3
(2)
P 		322.5
(0.8)
P 		489
(3)
P 		41.1
(-3)
P 		448
B 331.8
(0.6)
P 		358.1
(1)
P 		495.7
(3)
P 		78.9
(-3)
P 		417
C 412.6
(0.2)
P 		479.9
(0.8)
P 		707.3
(3)
P 		73.5
(-3)
P 		634
avr 385.6
(0.9) 		386.8
(0.9) 		564
(3) 		64.5
(-3) 		500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 151.2
(-3)
P 		274.7
(0.4)
P 		200.6
(-1.7)
P 		372
(3)
P 		325.2
(1.7)
P 		228.3
(-0.9)
P 		221
B 291.9
(-0.8)
P 		215.4
(-3)
P 		246.9
(-2.1)
P 		321.1
(-0)
P 		427.6
(3)
P 		290.6
(-0.9)
P 		212
C 403.3
(3)
P 		184.8
(-3)
P 		235.1
(-1.6)
P 		279.8
(-0.4)
P 		393.7
(2.7)
P 		282.2
(-0.3)
P 		219
avr 282.1
(-0.8) 		225
(-3) 		227.5
(-2.9) 		324.3
(0.8) 		382.2
(3) 		267
(-1.4) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176266_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18942
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.L NCBI
Target Description Y71H2AM.L /REP_DB=WormBase Gene ID /WP=CE26266 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065205 NCBI Caenorhabditis elegans Y71H2AM.11 (Y71H2AM.11) mRNA, complete cds. 11/11 None
SNAP00000014439 ENSEMBL cdna:SNAP chromosome:CEL140:III:2716508:2719678:-1 11/11 None
Y71H2AM.11 ENSEMBL cdna:known chromosome:CEL140:III:2718236:2725084:-1 gene:Y71H2AM.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014463 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014483 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2718331-2728857(-) 84.09 88.18
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.11
Entrez Gene 175387 Entrez gene
SwissProt Q9BL46 EMBL-EBI
WormBase CE39068 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497606 Y71H2AM.11 [Caenorhabditis elegans] 0.0
blast AAK29983 Hypothetical protein Y71H2AM.11 [Caenorhabditis elegans] 0.0
blast CAE65002 Hypothetical protein CBG09840 [Caenorhabditis briggsae] 0.0
blast NP_497606 Y71H2AM.11 [Caenorhabditis elegans] 1.0E-124
blast AAK29983 Hypothetical protein Y71H2AM.11 [Caenorhabditis elegans] 1.0E-124
blast CAE65002 Hypothetical protein CBG09840 [Caenorhabditis briggsae] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR002933 EMBL-EBI Peptidase M20 2.7E-17
Pfam IPR002933 EMBL-EBI Peptidase M20 2.7E-60
Sequence
Target Sequence 
>C. ELEGANS:176266_S_AT
tgaatcgttggcgttatccatctctctcccttcacggagttgaaggagcattcagtcaac
cgggagccaagactgtaatcccggcaaaagtcgtcggaaaattctcgttgagaattgtac
cacacatgacaccagaggctactgataagcttgtcaatagttatttggattcgttgtggg
ctaagagaaagtctccgaatacttttaaagtgacatcgggacacggtggaatgccatggg
ttgctgattttcgtgatgccaacttttcagctggatcgagagctattgagagagatttgg
aaaacttcagaaaacatttttccaaaaaattaaatttcccgccaaaattgtacggaatga
caccagacttcactcgagagggtggaagtattccagtcacgctgaccatccaggatctca
ctaaaagtccagttatgcttcttccaattggtgcatccgatgatatggctcactcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATCGTTGGCGTTATCCATCTCT 196 575 1433 Antisense
AGCATTCAGTCAACCGGGAGCCAAG 164 79 1479 Antisense
GTACCACACATGACACCAGAGGCTA 644 457 1549 Antisense
GAATGCCATGGGTTGCTGATTTTCG 173 331 1661 Antisense
GATGCCAACTTTTCAGCTGGATCGA 578 415 1687 Antisense
GACACCAGACTTCACTCGAGAGGGT 558 367 1791 Antisense
AAGTATTCCAGTCACGCTGACCATC 471 157 1818 Antisense
GCTGACCATCCAGGATCTCACTAAA 374 295 1833 Antisense
AAAAGTCCAGTTATGCTTCTTCCAA 340 131 1855 Antisense
GCTTCTTCCAATTGGTGCATCCGAT 579 305 1869 Antisense
TGCATCCGATGATATGGCTCACTCG 453 577 1884 Antisense
Sequence Source Affymetrix Proprietary Database