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[176265_at]

Description F42H10.2 /REP_DB=WormBase Gene ID /WP=CE00164 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 83      6grp_total > 86      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 296.9
(-3)
P 		420.1
(3)
P 		351.8
(-0.3)
P 		401.2
(2.1)
P 		123
B 283.9
(-3)
P 		314
(-2.3)
P 		374.7
(-0.9)
P 		543.6
(3)
P 		260
C 245.4
(-3)
P 		322.9
(-1.3)
P 		388.7
(0.2)
P 		516.9
(3)
P 		272
avr 275.4
(-3) 		352.3
(-0.8) 		371.7
(-0.3) 		487.2
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 371.5
(-2.1)
P 		326.2
(-3)
P 		489.5
(0.1)
P 		465.5
(-0.4)
P 		518.5
(0.6)
P 		644.4
(3)
P 		318
B 424.4
(-3)
P 		433.6
(-2.8)
P 		577.6
(-0)
P 		450.1
(-2.5)
P 		594
(0.3)
P 		730.9
(3)
P 		307
C 292.7
(-3)
P 		445.8
(-0.9)
P 		370.3
(-1.9)
P 		594.1
(1.2)
P 		461.7
(-0.7)
P 		727.1
(3)
P 		434
avr 362.9
(-3) 		401.9
(-2.3) 		479.1
(-0.9) 		503.2
(-0.5) 		524.7
(-0.1) 		700.8
(3) 		338
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 108.1
(3)
P 		91.2
(0.9)
P 		92
(1)
P 		58.7
(-3)
P 		49
B 90.5
(-1)
P 		77.6
(-3)
P 		86.8
(-1.6)
P 		115.8
(3)
P 		38
C 81.2
(-3)
P 		92.8
(-1.7)
P 		135.5
(3)
P 		87.2
(-2.3)
P 		54
avr 93.3
(-0.9) 		87.2
(-3) 		104.8
(3) 		87.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 68.5
(-3)
P 		116
(0.2)
P 		106.6
(-0.4)
P 		118.1
(0.4)
P 		156.5
(3)
P 		156.9
(3)
P 		88
B 147.7
(-1.9)
P 		144.3
(-2)
P 		140.3
(-2.2)
P 		119.2
(-3)
P 		241.4
(1.8)
P 		272.6
(3)
P 		153
C 108.5
(-2.4)
P 		136
(-1.3)
P 		94.3
(-3)
P 		119.5
(-2)
P 		149.4
(-0.8)
P 		243.4
(3)
P 		149
avr 108.2
(-3) 		132.1
(-1.8) 		113.7
(-2.7) 		118.9
(-2.4) 		182.4
(0.8) 		224.3
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7196
Sequence Type Exemplar sequence
Representative Public ID F42H10.2 NCBI
Target Description F42H10.2 /REP_DB=WormBase Gene ID /WP=CE00164 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066475 NCBI Caenorhabditis elegans F42H10.2 (F42H10.2) mRNA, complete cds. 11/11 None
SNAP00000027855 ENSEMBL cdna:SNAP chromosome:CEL140:III:8488097:8490956:1 11/11 None
GENEFINDER00000027860 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8490553:8490956:1 11/11 None
F42H10.2 ENSEMBL cdna:known chromosome:CEL140:III:8490553:8490956:1 gene:F42H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8490547-8490951(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42H10.2
Entrez Gene 185684 Entrez gene
SwissProt P34415 EMBL-EBI
WormBase CE00164 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28020 Hypothetical protein F42H10.2 [Caenorhabditis elegans] ref|NP_498876.1| F42H10.2 [Caenorhabditis elegans] sp|P34415|YLZ2_CAEEL Hypothetical protein F42H10.2 in chromosome III 1.0E-65
blast CAE71245 Hypothetical protein CBG18121 [Caenorhabditis briggsae] 1.0E-47
blast CAA91025 Hypothetical protein F11C1.1 [Caenorhabditis elegans] ref|NP_510159.1| F11C1.1 [Caenorhabditis elegans] 3.0E-42
blast CAA91025 Hypothetical protein F11C1.1 [Caenorhabditis elegans] ref|NP_510159.1| F11C1.1 [Caenorhabditis elegans] 8.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR010625 EMBL-EBI CHCH 7.0E-11
Pfam IPR010625 EMBL-EBI CHCH 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:176265_AT
gaatgagcgtcgatgagtactgggaagatattaaagacgattatcttatacaactagcta
acacggaccctaatgaagtctatccaagcaataaccccggaccaacaactgctgatggcc
aaatcaattttgaatgtcactgtgtcggtcatcttgttggaagcccttgtggattcgagt
ttcgggaagcgattacgtgccaaaagaccaatagtgatggtgaaatagagcagggagctt
gcggtaaggagttgatgtcgttcatggagtgtgtcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGAGCGTCGATGAGTACTGGGA 434 331 41 Antisense
TATACAACTAGCTAACACGGACCCT 17 659 87 Antisense
CACGGACCCTAATGAAGTCTATCCA 542 197 102 Antisense
CTATCCAAGCAATAACCCCGGACCA 271 219 120 Antisense
CCCGGACCAACAACTGCTGATGGCC 318 255 136 Antisense
GAATGTCACTGTGTCGGTCATCTTG 43 333 172 Antisense
TGTCGGTCATCTTGTTGGAAGCCCT 74 557 183 Antisense
GAAGCCCTTGTGGATTCGAGTTTCG 526 343 200 Antisense
GAAGCGATTACGTGCCAAAAGACCA 416 323 226 Antisense
GAGCAGGGAGCTTGCGGTAAGGAGT 699 387 268 Antisense
GATGTCGTTCATGGAGTGTGTCACA 474 409 294 Antisense
Sequence Source Affymetrix Proprietary Database