[Home] | [Total List]

[176264_at]

Description F42H10.5 /REP_DB=WormBase Gene ID /WP=CE00167 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 91      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 334.5
(3)
P 		249.7
(0.5)
A 		133.7
(-3)
A 		202.7
(-0.9)
A 		201
B 299.8
(3)
P 		204.7
(0.2)
A 		93
(-3)
A 		251.4
(1.6)
P 		207
C 372.5
(3)
P 		171
(-2.1)
A 		135.4
(-3)
A 		246.2
(-0.2)
P 		237
avr 335.6
(3) 		208.5
(-0.5) 		120.7
(-3) 		233.4
(0.1) 		215

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 180.6
(-2.1)
A 		254.2
(0.5)
P 		233.9
(-0.2)
A 		326.9
(3)
P 		265.2
(0.9)
P 		154.2
(-3)
P 		173
B 265.5
(2.1)
P 		205.6
(-0.2)
P 		171.1
(-1.5)
P 		262.7
(2)
P 		288.3
(3)
P 		133.2
(-3)
P 		155
C 352.4
(3)
P 		224
(-0.6)
P 		186.1
(-1.6)
A 		353.2
(3)
P 		313
(1.9)
P 		135.3
(-3)
M 		218
avr 266.2
(1.3) 		227.9
(0) 		197
(-1.1) 		314.3
(3) 		288.8
(2.1) 		140.9
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 121.8
(3)
P 		54.2
(-1.4)
A 		35
(-2.7)
A 		29.7
(-3)
A 		92
B 95.6
(3)
P 		50.5
(-0.7)
A 		21.5
(-3)
A 		53.6
(-0.4)
P 		74
C 123.3
(3)
P 		49.2
(-2.4)
A 		47.2
(-2.6)
A 		41.5
(-3)
P 		82
avr 113.6
(3) 		51.3
(-1.7) 		34.6
(-3) 		41.6
(-2.5) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 33.3
(-3)
A 		90.4
(3)
P 		50.9
(-1.2)
A 		82.9
(2.2)
P 		80
(1.9)
P 		37.5
(-2.6)
P 		57
B 92.4
(1)
P 		68.4
(-0.9)
P 		41.5
(-3)
P 		69.6
(-0.8)
P 		117.1
(3)
P 		49.7
(-2.3)
P 		76
C 130.6
(3)
P 		68.4
(-1.4)
P 		47.4
(-2.9)
A 		71
(-1.2)
P 		101.3
(0.9)
P 		45.3
(-3)
M 		85
avr 85.4
(1.5) 		75.7
(0.4) 		46.6
(-2.7) 		74.5
(0.3) 		99.5
(3) 		44.2
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6683
Sequence Type Exemplar sequence
Representative Public ID F42H10.5 NCBI
Target Description F42H10.5 /REP_DB=WormBase Gene ID /WP=CE00167 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066470 NCBI Caenorhabditis elegans F42H10.5 (F42H10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000027864 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8473352:8477662:1 11/11 None
SNAP00000027851 ENSEMBL cdna:SNAP chromosome:CEL140:III:8474172:8477662:1 11/11 None
F42H10.5 ENSEMBL cdna:known chromosome:CEL140:III:8474555:8478285:1 gene:F42H10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8474549-8477657(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42H10.5
Entrez Gene 185686 Entrez gene
SwissProt P34418 EMBL-EBI
WormBase CE00167 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28025 Hypothetical protein F42H10.5 [Caenorhabditis elegans] ref|NP_498871.1| F42H10.5 [Caenorhabditis elegans] sp|P34418|YLZ5_CAEEL Hypothetical protein F42H10.5 in chromosome III 0.0
blast CAE71250 Hypothetical protein CBG18126 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176264_AT
gagaactttgattccacgtacatccaagccactgctctgaatcctcaattggctgttaca
ctaacttctgatcaaatgacaactgcgaaatctctcattgaaactgaaatttcgaggcga
accaagaagatgagaaaagctcaaagtgataagaaattggcaatgggtgtggattcacta
ttggcaaatgttatgaggaaaaatgatggaggatctgatggaggatgtgagacagcattg
gcaatttatggagatttatttcagtcgataactggaaacagttctgaatcaaaggaaaat
attgtgaatcagtattttgatgagatttctagcaccacttctgtggaaagcatgttcatg
cttcgaacattcggcaatccaatgcaagctccactctcttattggaaatcttgctcatca
cgatgctcggagctctcggatcttgccactgaacttttatccattccaatcttcactctt
accgctgaacgcgttttaagcttttcaccggattcgagctctttaaacacaaatttgatt
cttacaaatttagactctaccgatcagtttgagaagcaagttttactccgtttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAACTTTGATTCCACGTACATCC 619 391 1819 Antisense
TACATCCAAGCCACTGCTCTGAATC 270 645 1837 Antisense
GAATCCTCAATTGGCTGTTACACTA 444 329 1857 Antisense
ATGAGATTTCTAGCACCACTTCTGT 578 45 2138 Antisense
ATTCGGCAATCCAATGCAAGCTCCA 225 11 2187 Antisense
GCAAGCTCCACTCTCTTATTGGAAA 445 319 2202 Antisense
TCACGATGCTCGGAGCTCTCGGATC 65 627 2236 Antisense
GCCACTGAACTTTTATCCATTCCAA 513 279 2263 Antisense
TCACTCTTACCGCTGAACGCGTTTT 308 625 2291 Antisense
TTCACCGGATTCGAGCTCTTTAAAC 549 687 2322 Antisense
GAAGCAAGTTTTACTCCGTTTCAAT 51 341 2391 Antisense
Sequence Source Affymetrix Proprietary Database