[Home] | [Total List]

[176262_at]

Description Y58A7A.2 /REP_DB=WormBase Gene ID /WP=CE26195 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 26.1
(-3)
A 		161.9
(1.9)
P 		193.7
(3)
P 		39.7
(-2.5)
A 		168
B 42.7
(-2)
A 		165.6
(3)
P 		150.8
(2.4)
P 		18.2
(-3)
A 		147
C 31
(-3)
A 		177.3
(3)
P 		129.9
(1.1)
P 		45.6
(-2.4)
A 		146
avr 33.3
(-3) 		168.3
(3) 		158.1
(2.5) 		34.5
(-2.9) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 228.1
(1.8)
P 		136.7
(-0.4)
P 		279.3
(3)
P 		269.9
(2.8)
P 		138.3
(-0.3)
P 		26.5
(-3)
A 		253
B 226.8
(0.5)
P 		181.5
(-0.4)
P 		179
(-0.5)
P 		347.7
(3)
P 		141.5
(-1.2)
P 		54.4
(-3)
A 		293
C 206
(-0.1)
P 		169.2
(-0.9)
P 		179.7
(-0.7)
P 		339.4
(3)
P 		136.8
(-1.7)
P 		79.6
(-3)
A 		260
avr 220.3
(0.8) 		162.5
(-0.5) 		212.7
(0.6) 		319
(3) 		138.9
(-1.1) 		53.5
(-3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 9.5
(-2.5)
A 		35.1
(0.9)
P 		50.6
(3)
P 		5.8
(-3)
A 		45
B 13.6
(-1.4)
A 		40.9
(3)
P 		35
(2)
P 		3.9
(-3)
A 		37
C 10.3
(-2.6)
A 		51
(3)
P 		45.3
(2.2)
P 		7.7
(-3)
A 		43
avr 11.1
(-2.2) 		42.3
(2.8) 		43.6
(3) 		5.8
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 42
(0.4)
P 		48.6
(1.1)
P 		60.8
(2.3)
P 		68.5
(3)
P 		41.7
(0.4)
P 		6.4
(-3)
A 		62
B 78.9
(1.9)
P 		60.4
(0.4)
P 		43.5
(-1.1)
P 		92.1
(3)
P 		57.5
(0.1)
P 		20.3
(-3)
A 		72
C 76.4
(3)
P 		51.6
(0)
P 		45.7
(-0.7)
P 		68.3
(2)
P 		44.3
(-0.9)
P 		26.7
(-3)
A 		50
avr 65.8
(1.9) 		53.5
(0.7) 		50
(0.3) 		76.3
(3) 		47.8
(0.1) 		17.8
(-3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15239
Sequence Type Exemplar sequence
Representative Public ID Y58A7A.2 NCBI
Target Description Y58A7A.2 /REP_DB=WormBase Gene ID /WP=CE26195 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071958 NCBI Caenorhabditis elegans Y58A7A.2 (Y58A7A.2) mRNA, complete cds. 11/11 None
Y58A7A.2 ENSEMBL cdna:known chromosome:CEL140:V:5071665:5072044:-1 gene:Y58A7A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5071664-5072044(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y58A7A.2
Entrez Gene 190382 Entrez gene
SwissProt Q966A7 EMBL-EBI
WormBase CE26195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84616 Hypothetical protein Y58A7A.2 [Caenorhabditis elegans] ref|NP_504359.1| Y58A7A.2 [Caenorhabditis elegans] 8.0E-52
blast CAE64064 Hypothetical protein CBG08666 [Caenorhabditis briggsae] 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:176262_AT
atgtgtatgatcgtctatttctttttcatccacaaaccactcgcattctatttcatccgt
ctgttccacccacatccttttccggtcgtccttgaccatattcttctcctcatatcttca
cttatcggttttaaatctcaggattcatcatttagacatcagaattcagattgccaaatg
aacgtcttccaagtcattattttcttattgtcagttcttgctgtgttctcttcagctgat
ctttccattgatggcgaatcgttagttttgtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGTATGATCGTCTATTTCTTTT 693 49 13 Antisense
TTTCCGGTCGTCCTTGACCATATTC 252 663 91 Antisense
TCCTCATATCTTCACTTATCGGTTT 639 591 119 Antisense
CACTTATCGGTTTTAAATCTCAGGA 186 197 131 Antisense
ATCTCAGGATTCATCATTTAGACAT 106 33 147 Antisense
CAGATTGCCAAATGAACGTCTTCCA 503 203 179 Antisense
ACGTCTTCCAAGTCATTATTTTCTT 194 95 194 Antisense
ATTTTCTTATTGTCAGTTCTTGCTG 388 15 211 Antisense
AGTTCTTGCTGTGTTCTCTTCAGCT 115 65 225 Antisense
CTCTTCAGCTGATCTTTCCATTGAT 179 231 240 Antisense
GATGGCGAATCGTTAGTTTTGTCTA 230 407 262 Antisense
Sequence Source Affymetrix Proprietary Database