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[176261_s_at]

Description Y71H2AM.F /REP_DB=WormBase Gene ID /WP=CE26265 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_total > 56      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 182.8
(3)
P 		150.4
(-0.4)
P 		125.2
(-3)
P 		139.7
(-1.5)
P 		58
B 145.1
(2.3)
P 		148.6
(3)
P 		118.6
(-3)
P 		146.2
(2.5)
P 		30
C 181.9
(3)
P 		120.1
(-3)
P 		150.6
(-0)
P 		135.8
(-1.5)
P 		62
avr 169.9
(3) 		139.7
(-1.7) 		131.5
(-3) 		140.6
(-1.6) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 104.7
(3)
P 		49.4
(-1.7)
P 		84
(1.2)
P 		41
(-2.5)
A 		34.8
(-3)
A 		67.2
(-0.2)
M 		70
B 113.6
(0.8)
P 		74
(-1)
P 		76.4
(-0.9)
P 		69.9
(-1.2)
P 		31.1
(-3)
A 		160
(3)
P 		129
C 58.9
(-1.5)
P 		69.4
(-0.9)
A 		59.9
(-1.4)
A 		44.1
(-2.3)
A 		32.9
(-3)
A 		135.9
(3)
P 		103
avr 92.4
(1.1) 		64.3
(-0.9) 		73.4
(-0.2) 		51.7
(-1.7) 		32.9
(-3) 		121
(3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 66.6
(3)
P 		32.7
(-1.4)
P 		32.7
(-1.4)
P 		20.4
(-3)
P 		46
B 46.3
(3)
P 		36.7
(-0.1)
P 		27.5
(-3)
P 		31.1
(-1.9)
P 		19
C 60.2
(3)
P 		34.5
(-1.1)
P 		52.5
(1.8)
P 		22.9
(-3)
P 		37
avr 57.7
(3) 		34.6
(-1.2) 		37.6
(-0.7) 		24.8
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 19.3
(3)
P 		17.6
(1.9)
P 		18.3
(2.3)
P 		10.4
(-3)
A 		10.5
(-2.9)
A 		16.4
(1)
M 		9
B 39.5
(0.4)
P 		24.6
(-1.5)
P 		18.5
(-2.2)
P 		18.5
(-2.2)
P 		12.6
(-3)
A 		59.7
(3)
P 		47
C 21.8
(-0.9)
P 		21.2
(-1)
A 		15.3
(-2)
A 		8.9
(-3)
A 		10.7
(-2.7)
A 		45.5
(3)
P 		37
avr 26.9
(0.2) 		21.1
(-1) 		17.4
(-1.7) 		12.6
(-2.7) 		11.3
(-3) 		40.5
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176261_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18929
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.F NCBI
Target Description Y71H2AM.F /REP_DB=WormBase Gene ID /WP=CE26265 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065212 NCBI Caenorhabditis elegans Y71H2AM.17 (Y71H2AM.17) mRNA, complete cds. 11/11 None
SNAP00000014445 ENSEMBL cdna:SNAP chromosome:CEL140:III:2764640:2768655:-1 11/11 None
GENEFINDER00000014478 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2764640:2768655:-1 11/11 None
Y71H2AM.17 ENSEMBL cdna:known chromosome:CEL140:III:2764420:2768655:-1 gene:Y71H2AM.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2764639-2768655(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.17
Entrez Gene 175393 Entrez gene
SwissProt Q9BL39 EMBL-EBI
WormBase CE39070 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1598741_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 cfa
CANINE:1588307_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 cfa
CANINE_2:CFA.20347.1.S1_S_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 cfa
CANINE_2:CFA.5396.1.A1_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 cfa
CANINE_2:CFA.5396.1.A1_S_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 cfa
CANINE_2:CFA.8883.1.A1_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 cfa
CANINE_2:CFAAFFX.24592.1.S1_AT similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 cfa
DROSOPHILA_2:1631677_AT dm
DROSGENOME1:154080_AT dm
CHICKEN:GGA.6244.1.S1_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 gga
CHICKEN:GGA.6244.1.S1_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 gga
CHICKEN:GGAAFFX.11797.1.S1_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 gga
HU35KSUBA:AA046548_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HU35KSUBB:RC_N35385_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HU35KSUBB:RC_AA195255_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HU35KSUBC:RC_AA599120_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
U133_X3P:HS.61779.0.S1_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
U133_X3P:HS.332848.0.S2_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
U133_X3P:HS.332848.0.S1_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133A_2:211988_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-FOCUS:211988_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133_PLUS_2:211988_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133A:211988_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133A_2:211989_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133_PLUS_2:211989_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133A:211989_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133_PLUS_2:229511_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133B:229511_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U95AV2:33828_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U95B:47399_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133_PLUS_2:214871_X_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133A_2:214871_X_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133A:214871_X_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
U133_X3P:HS.233354.0.S1_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
U133_X3P:HS.127211.0.A1_3P_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133_PLUS_2:236016_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U133B:236016_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
HG-U95D:77132_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 hs
MU11KSUBA:AA472943_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MG-U74AV2:96651_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MG-U74CV2:170972_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MG-U74CV2:170722_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MOE430A:1422675_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MOUSE430A_2:1422675_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MOUSE430_2:1422675_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MOE430A:1422676_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MOUSE430A_2:1422676_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MOUSE430_2:1422676_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 mm
MG-U74CV2:135697_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA mm
MU19KSUBA:TC15249_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA mm
MU11KSUBB:W15858_S_AT SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 (Smarce1), mRNA mm
Protein Similarities
Method ID Description E-Value
blast NP_497613 Y71H2AM.17 [Caenorhabditis elegans] 1.0E-169
blast AAK29965 Hypothetical protein Y71H2AM.17 [Caenorhabditis elegans] 1.0E-161
blast AAK29965 Hypothetical protein Y71H2AM.17 [Caenorhabditis elegans] 1.0E-158
blast NP_497613 Y71H2AM.17 [Caenorhabditis elegans] 1.0E-158
blast CAE64980 Hypothetical protein CBG09815 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR000910 EMBL-EBI HMG1/2 (high mobility group) box 3.7E-17
Sequence
Target Sequence 
>C. ELEGANS:176261_S_AT
gtcttgcgggtgtcagatttgaacgaaataatcgattgattagtgatttgttctcgccga
gcatcgttactgatacaagaactgtagttccacaccaccgaatggagatgttgaagcgac
aggcgacatctcttggtactcatcagagcaaacttgaagaagagctcacaaattttcgga
gatattttggagtaaaaaccgaaaaaatactggaaagagcccatgacaatcgaaaaagag
ccatcgaaaagggcagtgacgacttccaagagcaattgaagaaagctgttagtgaaaaac
cagttgtagatgaggaaaagtttgaggaaactgttaaagaatgggaggagaagcttgcga
cagcttatgaagaatataagaagaaacaggaaactacagcaactcaaaatgcgaattcag
cgccactgttaagaaatttggtaatggaggagacaccgaagacgccggagcaagaaaaag
agcaaaatgtcaaggagaagccggcggagagcacagaaacaccagctgctggcacagagc
caagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTGCGGGTGTCAGATTTGAACG 127 467 437 Antisense
TGATTAGTGATTTGTTCTCGCCGAG 53 565 473 Antisense
TCTCGCCGAGCATCGTTACTGATAC 417 609 488 Antisense
GTAGTTCCACACCACCGAATGGAGA 216 455 520 Antisense
TTGAAGCGACAGGCGACATCTCTTG 339 703 547 Antisense
GACATCTCTTGGTACTCATCAGAGC 603 369 561 Antisense
GGCAGTGACGACTTCCAAGAGCAAT 292 537 688 Antisense
AAATGCGAATTCAGCGCCACTGTTA 646 119 843 Antisense
AGACACCGAAGACGCCGGAGCAAGA 506 71 887 Antisense
GCCGGCGGAGAGCACAGAAACACCA 590 283 936 Antisense
ACCAGCTGCTGGCACAGAGCCAAGT 398 85 957 Antisense
Sequence Source Affymetrix Proprietary Database