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[176260_at]

Description Y58A7A.1 /REP_DB=WormBase Gene ID /WP=CE26194 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 64      6grp_total > 73      4grp_total > 48      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 787
1 2 3 4 range
A 293.5
(-3)
P 		743.3
(0.5)
P 		1073.1
(3)
P 		396.8
(-2.2)
P 		780
B 304.7
(-3)
P 		849.9
(1.3)
P 		1072.1
(3)
P 		589.5
(-0.8)
P 		767
C 285.7
(-3)
P 		931.1
(2.1)
P 		1041.5
(3)
P 		445.8
(-1.7)
P 		756
avr 294.6
(-3) 		841.4
(1.3) 		1062.2
(3) 		477.4
(-1.6) 		768

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1171
1 2 3 4 5 6 range
A 401.6
(-3)
P 		786
(-1)
P 		1014.5
(0.1)
P 		1572.9
(3)
P 		1390.2
(2.1)
P 		739.8
(-1.3)
P 		1171
B 412.3
(-3)
P 		767.9
(-0.8)
P 		1089.3
(1.1)
P 		1215.8
(1.9)
P 		1398.5
(3)
P 		834.7
(-0.4)
P 		986
C 455.7
(-3)
P 		793.8
(-0.6)
P 		1149.4
(1.9)
P 		1298.4
(3)
P 		1142.9
(1.9)
P 		845.5
(-0.2)
P 		843
avr 423.2
(-3) 		782.6
(-0.7) 		1084.4
(1.2) 		1362.4
(3) 		1310.5
(2.7) 		806.7
(-0.6) 		939
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 106.9
(-1.7)
P 		161.3
(-0.2)
P 		280.5
(3)
P 		58.1
(-3)
P 		222
B 97.2
(-3)
P 		209.9
(1.5)
P 		248.4
(3)
P 		125.6
(-1.9)
P 		151
C 94.6
(-2.6)
P 		267.7
(1)
P 		363
(3)
P 		75.2
(-3)
P 		288
avr 99.6
(-2.6) 		213
(0.6) 		297.3
(3) 		86.3
(-3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 74
(-3)
P 		279.5
(0.6)
P 		220.9
(-0.4)
P 		398.9
(2.6)
P 		419.5
(3)
P 		180.1
(-1.2)
P 		346
B 143.5
(-3)
P 		255.6
(-1.4)
P 		264.5
(-1.3)
P 		322
(-0.5)
P 		568.2
(3)
P 		311.3
(-0.6)
P 		425
C 168.9
(-3)
P 		242.2
(-0.8)
P 		292.5
(0.7)
P 		261.1
(-0.2)
P 		369.8
(3)
P 		283
(0.4)
P 		201
avr 128.8
(-3) 		259.1
(-0.6) 		259.3
(-0.6) 		327.3
(0.7) 		452.5
(3) 		258.1
(-0.6) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176260_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15128
Sequence Type Exemplar sequence
Representative Public ID Y58A7A.1 NCBI
Target Description Y58A7A.1 /REP_DB=WormBase Gene ID /WP=CE26194 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071957 NCBI Caenorhabditis elegans Y58A7A.1 (Y58A7A.1) mRNA, complete cds. 11/11 None
SNAP00000010493 ENSEMBL cdna:SNAP chromosome:CEL140:V:5067600:5068443:-1 11/11 None
GENEFINDER00000010501 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5067600:5069344:-1 11/11 None
Y58A7A.1 ENSEMBL cdna:known chromosome:CEL140:V:5067600:5068428:-1 gene:Y58A7A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5067599-5068428(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y58A7A.1
Entrez Gene 190381 Entrez gene
SwissProt Q966A8 EMBL-EBI
WormBase CE26194 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6825 copper ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5375 copper ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84615 Hypothetical protein Y58A7A.1 [Caenorhabditis elegans] ref|NP_504358.1| Y58A7A.1 [Caenorhabditis elegans] 2.0E-60
blast AAK84615 Hypothetical protein Y58A7A.1 [Caenorhabditis elegans] ref|NP_504358.1| Y58A7A.1 [Caenorhabditis elegans] 3.0E-60
blast CAE64062 Hypothetical protein CBG08664 [Caenorhabditis briggsae] 2.0E-54
blast CAE64062 Hypothetical protein CBG08664 [Caenorhabditis briggsae] 4.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR007274 EMBL-EBI Ctr copper transporter 9.9E-28
Pfam IPR007274 EMBL-EBI Ctr copper transporter 3.9E-28
Pfam IPR007274 EMBL-EBI Ctr copper transporter 3.9E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504358.1 2 21-43,85-107
Y58A7A.1 2 21-43,85-107
SNAP00000010493 2 27-49,90-112
GENEFINDER00000010501 2 55-77,118-140
Sequence
Target Sequence 
>C. ELEGANS:176260_AT
tgtccttccactttggcactgaagaaactattcttttcgacttctggaaaactgaaactg
ctgttggaattgctgttgcatgctttatcactgtacttctcgcgtttttgatggaaactc
tcagattcttcagggattatcgaaaagcgcagactcaactccaccaacctccaatttctc
cagaagaccgtcttaagagatcccctcaattggacctgatcgatcctcttcttcaacttt
tccagctgacaattgcctatttccttatgttaattttcatgacattcaatgcctatctct
gtttcttcaccgttgtaggagaagtagtatgccatttgctttatcgtacactcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCTTCCACTTTGGCACTGAAGA 398 557 14 Antisense
TGCATGCTTTATCACTGTACTTCTC 335 579 90 Antisense
TGTACTTCTCGCGTTTTTGATGGAA 18 561 105 Antisense
TCGAAAAGCGCAGACTCAACTCCAC 314 601 153 Antisense
CAACCTCCAATTTCTCCAGAAGACC 440 187 178 Antisense
GAAGACCGTCTTAAGAGATCCCCTC 136 335 196 Antisense
CAATTGGACCTGATCGATCCTCTTC 477 179 220 Antisense
CCAGCTGACAATTGCCTATTTCCTT 128 273 255 Antisense
GACATTCAATGCCTATCTCTGTTTC 312 371 294 Antisense
CTCTGTTTCTTCACCGTTGTAGGAG 518 231 310 Antisense
GCCATTTGCTTTATCGTACACTCTA 82 281 344 Antisense
Sequence Source Affymetrix Proprietary Database