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[176257_at]

Description Y22D7AR.L /REP_DB=WormBase Gene ID /WP=CE23406 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 04      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 27.8
(-3)
A 		69.6
(2.1)
A 		60.2
(1)
A 		76.8
(3)
A 		49
B 47.9
(2.9)
A 		48.4
(3)
A 		3.6
(-3)
A 		3.8
(-3)
A 		45
C 43.6
(-0)
A 		57.2
(1)
A 		5.4
(-3)
A 		83
(3)
A 		78
avr 39.8
(-0.2) 		58.4
(3) 		23.1
(-3) 		54.5
(2.3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 88.5
(3)
A 		5.1
(-2.8)
A 		38.2
(-0.5)
A 		35.3
(-0.7)
A 		34.8
(-0.8)
A 		2.8
(-3)
A 		86
B 56.4
(2.1)
A 		41
(0.4)
A 		34
(-0.3)
A 		23.4
(-1.4)
A 		65.4
(3)
A 		8.1
(-3)
A 		57
C 34.8
(-0.8)
A 		80.8
(3)
A 		17.9
(-2.2)
A 		42.5
(-0.2)
A 		8
(-3)
A 		9.4
(-2.9)
A 		73
avr 59.9
(3) 		42.3
(1) 		30
(-0.4) 		33.7
(0) 		36.1
(0.3) 		6.8
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.1
(-3)
A 		15.1
(2.4)
A 		15.7
(3)
A 		11.2
(-1.8)
A 		6
B 15.3
(3)
A 		12
(1.6)
A 		0.8
(-3)
A 		0.8
(-3)
A 		15
C 14.4
(2.2)
A 		16.4
(3)
A 		1.9
(-3)
A 		14
(2)
A 		15
avr 13.3
(2.1) 		14.5
(3) 		6.1
(-3) 		8.7
(-1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 16.3
(3)
A 		1.8
(-2.6)
A 		8.3
(-0.1)
A 		8.9
(0.2)
A 		10.5
(0.8)
A 		0.7
(-3)
A 		16
B 19.6
(1.2)
A 		13.7
(-0.3)
A 		8.2
(-1.7)
A 		6.2
(-2.2)
A 		26.6
(3)
A 		3
(-3)
A 		24
C 12.9
(-0.2)
A 		24.7
(3)
A 		4.5
(-2.5)
A 		8.5
(-1.4)
A 		2.6
(-3)
A 		3.1
(-2.9)
A 		22
avr 16.3
(3) 		13.4
(1.8) 		7
(-1) 		7.9
(-0.6) 		13.2
(1.7) 		2.3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19016
Sequence Type Exemplar sequence
Representative Public ID Y22D7AR.L NCBI
Target Description Y22D7AR.L /REP_DB=WormBase Gene ID /WP=CE23406 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065048(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065048 NCBI Caenorhabditis elegans Y22D7AR.2 (Y22D7AR.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025842 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1705977:1715165:1 11/11 None
SNAP00000025836 ENSEMBL cdna:SNAP chromosome:CEL140:III:1708763:1713333:1 11/11 None
Y22D7AR.2 ENSEMBL cdna:known chromosome:CEL140:III:1706545:1713333:1 gene:Y22D7AR.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1706544-1713333(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AR.2
Entrez Gene 189510 Entrez gene
SwissProt Q9BKX2 EMBL-EBI
WormBase CE23406 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29873 Hypothetical protein Y22D7AR.2 [Caenorhabditis elegans] ref|NP_497449.1| Y22D7AR.2 [Caenorhabditis elegans] 0.0
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 0.0
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 0.0
blast AAB54272 Hypothetical protein R155.2 [Caenorhabditis elegans] ref|NP_497484.1| R155.2 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.7E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.7E-19
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-10
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 9.6E-34
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.0E-28
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 5.7E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.5E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497449.1 1 983-1005
Y22D7AR.2 1 983-1005
GENEFINDER00000025842 2 1056-1078,1123-1145
SNAP00000025836 2 5-27,813-835
Sequence
Target Sequence 
>C. ELEGANS:176257_AT
gaaacaaaggagccgctagtccctctgcaacaaactatcatcattctgcaaaggcagatg
ctgagatgggttttttggagaacaactccccgtggtcatacattggtctgagtcttatcg
tgtgttcttttgttgccctattcgtctacattggtctttggttttatcactcacgaaaag
tcaaacttgatgtatctcccgatctggtacccctgccgaacgatttaattacaacaactg
ctctaccagaaatcaaaattgagaaagctccaaaggaaccaaaagtcgaatcgttcagtt
taacactgctggtcgctataaaatacgttactgatcttcatctagtttccattccactta
tcgagaacacacgcgtcattctaaagaaatatggttcaagattcaaggatggatttcttc
acgcgaactatgtgacatgcccaaatggagcacagttaattctcacacaatctccacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACAAAGGAGCCGCTAGTCCCTC 413 355 2867 Antisense
GCTAGTCCCTCTGCAACAAACTATC 266 303 2881 Antisense
TCCCCGTGGTCATACATTGGTCTGA 112 595 2953 Antisense
GTCTTATCGTGTGTTCTTTTGTTGC 57 469 2978 Antisense
CCCTATTCGTCTACATTGGTCTTTG 33 257 3002 Antisense
GGTCTTTGGTTTTATCACTCACGAA 492 503 3019 Antisense
CAAACTTGATGTATCTCCCGATCTG 489 191 3048 Antisense
AGTTTAACACTGCTGGTCGCTATAA 76 63 3163 Antisense
TGATCTTCATCTAGTTTCCATTCCA 85 565 3198 Antisense
GGATGGATTTCTTCACGCGAACTAT 247 515 3273 Antisense
TTAATTCTCACACAATCTCCACAAT 184 685 3322 Antisense
Sequence Source Affymetrix Proprietary Database