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[176256_s_at]

Description Y58A7A.4 /REP_DB=WormBase Gene ID /WP=CE26197 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 55      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 121.5
(3)
P 		53.3
(-2.4)
A 		73.1
(-0.9)
A 		46.4
(-3)
A 		75
B 138.1
(3)
P 		22.5
(-3)
A 		87.7
(0.4)
A 		71.4
(-0.5)
A 		116
C 129.9
(3)
P 		70.3
(-1.2)
A 		73.7
(-1)
A 		45.7
(-3)
A 		84
avr 129.8
(3) 		48.7
(-3) 		78.2
(-0.8) 		54.5
(-2.6) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 264
(3)
P 		165.7
(-0.4)
P 		120
(-1.9)
P 		89.4
(-3)
P 		107
(-2.4)
A 		92
(-2.9)
P 		175
B 208.9
(3)
P 		126.4
(-1.2)
P 		127.8
(-1.1)
P 		97.7
(-2.6)
P 		90.8
(-3)
A 		93.8
(-2.8)
P 		118
C 187.1
(2.4)
P 		163.3
(1.2)
P 		200.8
(3)
P 		130.7
(-0.3)
A 		73
(-3)
A 		82.9
(-2.5)
A 		128
avr 220
(3) 		151.8
(-0.1) 		149.5
(-0.2) 		105.9
(-2.3) 		90.3
(-3) 		89.6
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 44.2
(3)
P 		11.6
(-2.2)
A 		19.1
(-1)
A 		6.8
(-3)
A 		37
B 44
(3)
P 		5.6
(-3)
A 		20.3
(-0.7)
A 		15.2
(-1.5)
A 		38
C 43
(3)
P 		20.2
(-0.9)
A 		25.7
(0.1)
A 		7.7
(-3)
A 		35
avr 43.7
(3) 		12.5
(-2.5) 		21.7
(-0.9) 		9.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 48.7
(1.3)
P 		58.9
(3)
P 		26.1
(-2.4)
P 		22.7
(-3)
P 		32.3
(-1.4)
A 		22.4
(-3)
P 		37
B 72.7
(3)
P 		42.1
(-0.9)
P 		31
(-2.3)
P 		25.9
(-3)
P 		36.9
(-1.6)
A 		35
(-1.8)
P 		47
C 69.3
(3)
P 		49.8
(0.4)
P 		51.1
(0.6)
P 		26.3
(-2.6)
A 		23.6
(-3)
A 		27.8
(-2.4)
A 		46
avr 63.6
(3) 		50.3
(0.9) 		36.1
(-1.3) 		25
(-3) 		30.9
(-2.1) 		28.4
(-2.5) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176256_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15464
Sequence Type Exemplar sequence
Representative Public ID Y58A7A.4 NCBI
Target Description Y58A7A.4 /REP_DB=WormBase Gene ID /WP=CE26197 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071960 NCBI Caenorhabditis elegans Y58A7A.4 (Y58A7A.4) mRNA, complete cds. 11/11 None
SNAP00000010495 ENSEMBL cdna:SNAP chromosome:CEL140:V:5081857:5084820:-1 11/11 None
GENEFINDER00000010502 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5081857:5084820:-1 11/11 None
Y58A7A.4 ENSEMBL cdna:known chromosome:CEL140:V:5081815:5084820:-1 gene:Y58A7A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5081856-5084820(-) 100.0 100.0
chrV:5078370-5086758(-) 75.4 75.4
Public Domain and Genome References
Gene Title
Ensembl Y58A7A.4
Entrez Gene 3565089 Entrez gene
SwissProt Q966A5 EMBL-EBI
WormBase CE26197 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84618 Hypothetical protein Y58A7A.4 [Caenorhabditis elegans] ref|NP_504361.1| Y58A7A.4 [Caenorhabditis elegans] 0.0
blast AAK84617 Hypothetical protein Y58A7A.3 [Caenorhabditis elegans] ref|NP_504360.1| Y58A7A.3 [Caenorhabditis elegans] 0.0
blast CAE64066 Hypothetical protein CBG08668 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176256_S_AT
aagaccttctactctgtcaaactgccgaataagtttgcttcttgccctggatgcaaaatc
aatataaacacggagaccatgaactgtgtttattatccatactattatccatatcccgca
aggtatcgcgagcaacagagaagctatgaccaatctttaaagtatgccgataatggacct
tattgtccagttgctacagtctatactgatatccgcttgattcctgcaatcaaagattcg
gtaatgagaatatgtgcacggacaagagatctacgacttgacatcaaacttcggaatcgt
tttttgaaggctgaacaattattgattaaaaatggaattctgaagaccgaaatattggag
aatctgctaggaactgctctctatttggttgagaatgttaccgcatggatgcacatgaca
aatagaaaggacaagagtttgaaggatctgctagaagaaatcatggtgcatcgcgagaag
cttttggaactcttggagctggagagccatgacgctcttagaaattctgttcaacaattg
aggaaagcaatcgattctgtagtagcaagcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACCTTCTACTCTGTCAAACTGC 241 151 2125 Antisense
CGAATAAGTTTGCTTCTTGCCCTGG 178 253 2150 Antisense
TCCATACTATTATCCATATCCCGCA 461 591 2220 Antisense
TATCCCGCAAGGTATCGCGAGCAAC 72 657 2236 Antisense
GACCTTATTGTCCAGTTGCTACAGT 351 373 2300 Antisense
TGATATCCGCTTGATTCCTGCAATC 348 563 2331 Antisense
GAGATCTACGACTTGACATCAAACT 212 397 2390 Antisense
GAATCTGCTAGGAACTGCTCTCTAT 327 329 2484 Antisense
ATGGTGCATCGCGAGAAGCTTTTGG 95 51 2587 Antisense
GGAGCTGGAGAGCCATGACGCTCTT 241 521 2619 Antisense
AATCGATTCTGTAGTAGCAAGCGTC 137 169 2673 Antisense
Sequence Source Affymetrix Proprietary Database