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[176254_at]

Description K02D10.3 /REP_DB=WormBase Gene ID /WP=CE00243 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 9.7
(-2.7)
A 		9.3
(-3)
A 		13.6
(0.1)
A 		17.7
(3)
A 		8
B 8.8
(-3)
A 		17.2
(-1.8)
A 		49.3
(3)
A 		23.2
(-0.9)
A 		41
C 37.9
(-0.9)
A 		16.6
(-2.7)
A 		12.7
(-3)
A 		86
(3)
A 		73
avr 18.8
(-2.1) 		14.4
(-3) 		25.2
(-0.7) 		42.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.6
(-3)
A 		11.1
(-2.8)
A 		38.4
(1.2)
A 		39.7
(1.4)
A 		51
(3)
A 		16.3
(-2)
A 		41
B 18.9
(-0.6)
A 		16.5
(-1.1)
A 		7.1
(-3)
A 		19.4
(-0.5)
A 		36.9
(3)
A 		22.3
(0.1)
A 		30
C 18.2
(-0.9)
A 		16.6
(-1.2)
A 		33.6
(2.6)
A 		20.4
(-0.4)
A 		8.8
(-3)
A 		35.5
(3)
A 		27
avr 15.6
(-2.7) 		14.7
(-3) 		26.4
(1) 		26.5
(1) 		32.2
(3) 		24.7
(0.4) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.5
(2.6)
A 		2
(-3)
A 		3.6
(3)
A 		2.6
(-0.8)
A 		2
B 2.8
(-3)
A 		4.2
(-2)
A 		11.4
(3)
A 		4.9
(-1.5)
A 		9
C 12.5
(1.8)
A 		4.8
(-2.8)
A 		4.4
(-3)
A 		14.5
(3)
A 		10
avr 6.3
(1.3) 		3.7
(-3) 		6.5
(1.7) 		7.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.8
(-3)
A 		4
(-2)
A 		8.4
(-0.1)
A 		10.1
(0.7)
A 		15.4
(3)
A 		4
(-2)
A 		14
B 6.6
(-0.8)
A 		5.5
(-1.3)
A 		1.7
(-3)
A 		5.1
(-1.5)
A 		15
(3)
A 		8.3
(-0)
A 		13
C 6.8
(-0.4)
A 		5.1
(-1.5)
A 		8.5
(0.7)
A 		4.1
(-2.2)
A 		2.9
(-3)
A 		11.9
(3)
A 		9
avr 5.1
(-2.8) 		4.9
(-3) 		6.2
(-1.7) 		6.4
(-1.5) 		11.1
(3) 		8.1
(0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8085
Sequence Type Exemplar sequence
Representative Public ID K02D10.3 NCBI
Target Description K02D10.3 /REP_DB=WormBase Gene ID /WP=CE00243 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066537 NCBI Caenorhabditis elegans K02D10.3 (K02D10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000017007 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8769885:8771907:-1 11/11 None
SNAP00000017000 ENSEMBL cdna:SNAP chromosome:CEL140:III:8770658:8771907:-1 11/11 None
K02D10.3 ENSEMBL cdna:known chromosome:CEL140:III:8771236:8771853:-1 gene:K02D10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8771231-8771849(-) 81.76 100.0
Public Domain and Genome References
Gene Title
Ensembl K02D10.3
Entrez Gene 186878 Entrez gene
SwissProt P34494 EMBL-EBI
WormBase CE00243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28083 Hypothetical protein K02D10.2 [Caenorhabditis elegans] ref|NP_498937.1| K02D10.2 [Caenorhabditis elegans] sp|P34493|YMQ2_CAEEL Hypothetical protein K02D10.2 in chromosome III 4.0E-59
blast AAA28083 Hypothetical protein K02D10.2 [Caenorhabditis elegans] ref|NP_498937.1| K02D10.2 [Caenorhabditis elegans] sp|P34493|YMQ2_CAEEL Hypothetical protein K02D10.2 in chromosome III 4.0E-43
blast AAA28081 Hypothetical protein K02D10.3 [Caenorhabditis elegans] ref|NP_498938.1| K02D10.3 [Caenorhabditis elegans] sp|P34494|YMQ3_CAEEL Hypothetical protein K02D10.3 in chromosome III 1.0E-21
blast AAA28081 Hypothetical protein K02D10.3 [Caenorhabditis elegans] ref|NP_498938.1| K02D10.3 [Caenorhabditis elegans] sp|P34494|YMQ3_CAEEL Hypothetical protein K02D10.3 in chromosome III 2.0E-18
blast AAA28081 Hypothetical protein K02D10.3 [Caenorhabditis elegans] ref|NP_498938.1| K02D10.3 [Caenorhabditis elegans] sp|P34494|YMQ3_CAEEL Hypothetical protein K02D10.3 in chromosome III 9.0E-12
Sequence
Target Sequence 
>C. ELEGANS:176254_AT
gacccgcacgcatcgcagaatgcgggaagatcggttccggtacaataaactcgaatgtcg
tgccttccgtcaaccttccgtcaccttccgtcaaaccttccgtcacaccttccgtcaaaa
agcctccgcatgtgattagatcagactactcgaagcctcgtgaaaagccagcaaaagttg
caaagaaaccaacagttaaaaatgataagaagccaaagccggtagcaatcgtcgctccaa
caggaatcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCGCACGCATCGCAGAATGCGG 56 383 38 Antisense
GAATGCGGGAAGATCGGTTCCGGTA 124 327 55 Antisense
GATCGGTTCCGGTACAATAAACTCG 559 375 66 Antisense
CGTCAAAAAGCCTCCGCATGTGATT 230 241 150 Antisense
AAGCCTCCGCATGTGATTAGATCAG 384 149 157 Antisense
TAGATCAGACTACTCGAAGCCTCGT 220 653 174 Antisense
GACTACTCGAAGCCTCGTGAAAAGC 559 373 181 Antisense
GAAGCCTCGTGAAAAGCCAGCAAAA 293 345 189 Antisense
GAAGCCAAAGCCGGTAGCAATCGTC 446 345 246 Antisense
CCAAAGCCGGTAGCAATCGTCGCTC 523 273 250 Antisense
AATCGTCGCTCCAACAGGAATCATA 258 169 264 Antisense
Sequence Source Affymetrix Proprietary Database