[Home] | [Total List]

[176253_at]

Description Y69A2AR.L /REP_DB=WormBase Gene ID /WP=CE22795 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 56      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 77.2
(2.8)
A 		78.7
(3)
A 		46.7
(-2.1)
A 		41
(-3)
A 		38
B 45.1
(3)
A 		44.5
(2.9)
A 		41.2
(2.3)
A 		13.8
(-3)
A 		31
C 62.1
(0.6)
A 		70.4
(3)
A 		49.9
(-3)
A 		52
(-2.4)
A 		21
avr 61.5
(2.4) 		64.5
(3) 		45.9
(-0.9) 		35.6
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 15.2
(-3)
A 		88.1
(3)
A 		65.5
(1.1)
A 		29.9
(-1.8)
A 		56.8
(0.4)
A 		83.8
(2.6)
A 		73
B 64.4
(1.6)
A 		52.1
(0.6)
A 		28.7
(-1.5)
A 		11.3
(-3)
A 		27.5
(-1.6)
A 		80
(3)
P 		69
C 56
(1.9)
A 		59.3
(2.3)
A 		15.1
(-3)
A 		25.4
(-1.8)
A 		29.2
(-1.3)
A 		64.9
(3)
M 		50
avr 45.2
(-0.4) 		66.5
(1.9) 		36.4
(-1.4) 		22.2
(-3) 		37.8
(-1.3) 		76.2
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 28.1
(3)
A 		17.1
(0)
A 		12.2
(-1.3)
A 		6
(-3)
A 		22
B 14.4
(3)
A 		11
(1.2)
A 		9.5
(0.4)
A 		2.9
(-3)
A 		12
C 20.6
(3)
A 		20.2
(2.8)
A 		17.4
(1.4)
A 		8.8
(-3)
A 		12
avr 21
(3) 		16.1
(1.1) 		13
(-0.2) 		5.9
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.8
(-3)
A 		31.3
(3)
A 		14.3
(-0.6)
A 		7.6
(-2)
A 		17.1
(0)
A 		20.4
(0.7)
A 		29
B 22.4
(1.3)
A 		17.3
(0.2)
A 		7
(-2.1)
A 		3
(-3)
A 		11.2
(-1.2)
A 		29.8
(3)
P 		27
C 20.8
(2.7)
A 		18.1
(1.8)
A 		3.9
(-3)
A 		5.1
(-2.6)
A 		9.4
(-1.1)
A 		21.7
(3)
M 		18
avr 15.3
(0.2) 		22.2
(2.4) 		8.4
(-2) 		5.2
(-3) 		12.6
(-0.6) 		24
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19365
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.L NCBI
Target Description Y69A2AR.L /REP_DB=WormBase Gene ID /WP=CE22795 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067818 NCBI Caenorhabditis elegans Y69A2AR.23 (Y69A2AR.23) mRNA, complete cds. 11/11 None
SNAP00000018807 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2548543:2552071:-1 11/11 None
GENEFINDER00000018851 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2549712:2552071:-1 11/11 None
Y69A2AR.23 ENSEMBL cdna:known chromosome:CEL140:IV:2549950:2550719:-1 gene:Y69A2AR.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2549955-2550725(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.23
Entrez Gene 190544 Entrez gene
SwissProt Q95XI4 EMBL-EBI
WormBase CE22795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68568 Hypothetical protein Y69A2AR.23 [Caenorhabditis elegans] ref|NP_500219.1| Y69A2AR.23 [Caenorhabditis elegans] 9.0E-25
blast AAK68568 Hypothetical protein Y69A2AR.23 [Caenorhabditis elegans] ref|NP_500219.1| Y69A2AR.23 [Caenorhabditis elegans] 5.0E-24
blast AAK68568 Hypothetical protein Y69A2AR.23 [Caenorhabditis elegans] ref|NP_500219.1| Y69A2AR.23 [Caenorhabditis elegans] 1.0E-23
blast CAE65574 Hypothetical protein CBG10569 [Caenorhabditis briggsae] 9.0E-11
blast CAE65574 Hypothetical protein CBG10569 [Caenorhabditis briggsae] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000018807 1 116-138
GENEFINDER00000018851 1 114-136
Sequence
Target Sequence 
>C. ELEGANS:176253_AT
atgtcgtcggagcacgtgaatgaggaaattgagattccagatgaggatgaagaggaacaa
agaagccctcaacatccagcagcttcaccttttccaaaggctaagtccccagtgtcacca
cggattgggatgtccccacgagttggattgtccccaaagccaattgcaagaaccccacaa
actgccagaactccgacgaaaaagggtccgatgagcccatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGTCGGAGCACGTGAATGAGG 67 47 13 Antisense
AACAAAGAAGCCCTCAACATCCAGC 17 133 68 Antisense
GCAGCTTCACCTTTTCCAAAGGCTA 438 313 91 Antisense
TCCAAAGGCTAAGTCCCCAGTGTCA 435 587 105 Antisense
TCCCCAGTGTCACCACGGATTGGGA 161 587 118 Antisense
TGTCACCACGGATTGGGATGTCCCC 443 559 125 Antisense
GATGTCCCCACGAGTTGGATTGTCC 69 397 141 Antisense
TGGATTGTCCCCAAAGCCAATTGCA 705 549 156 Antisense
ATTGCAAGAACCCCACAAACTGCCA 158 3 175 Antisense
AACTGCCAGAACTCCGACGAAAAAG 207 139 192 Antisense
GAAAAAGGGTCCGATGAGCCCATCC 82 355 210 Antisense
Sequence Source Affymetrix Proprietary Database