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[176252_at]

Description K02D10.4 /REP_DB=WormBase Gene ID /WP=CE00244 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      6grp_total > 20      4grp_total > 39      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 488
1 2 3 4 range
A 483.1
(3)
P 		101.1
(-2.9)
A 		97.2
(-3)
A 		243.8
(-0.7)
P 		386
B 494.3
(3)
P 		155.7
(-1.7)
A 		64.4
(-3)
A 		287.1
(0.1)
P 		430
C 552
(3)
P 		114
(-2.9)
A 		105.7
(-3)
A 		218.6
(-1.5)
P 		446
avr 509.8
(3) 		123.6
(-2.5) 		89.1
(-3) 		249.8
(-0.7) 		421

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 114.7
(-3)
A 		215.3
(3)
P 		211.2
(2.8)
P 		141.1
(-1.4)
P 		135.2
(-1.8)
A 		137.7
(-1.6)
A 		101
B 157.6
(-2)
P 		218.1
(2.7)
P 		221.5
(3)
P 		159.3
(-1.9)
P 		144.8
(-3)
A 		194.3
(0.9)
P 		77
C 176.1
(-1)
P 		251.1
(3)
P 		193
(-0.1)
P 		224.7
(1.6)
P 		137.9
(-3)
P 		162.6
(-1.7)
P 		113
avr 149.5
(-2.3) 		228.2
(3) 		208.6
(1.7) 		175
(-0.6) 		139.3
(-3) 		164.9
(-1.3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 175.9
(3)
P 		22
(-3)
A 		25.4
(-2.9)
A 		35.7
(-2.5)
P 		154
B 157.6
(3)
P 		38.4
(-2)
A 		14.9
(-3)
A 		61.2
(-1.1)
P 		143
C 182.7
(3)
P 		32.8
(-3)
A 		36.8
(-2.8)
A 		36.9
(-2.8)
P 		150
avr 172.1
(3) 		31.1
(-2.8) 		25.7
(-3) 		44.6
(-2.2) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 21.2
(-3)
A 		76.6
(3)
P 		46
(-0.3)
P 		35.8
(-1.4)
P 		40.8
(-0.9)
A 		33.5
(-1.7)
A 		55
B 54.8
(-0.5)
P 		72.6
(3)
P 		53.8
(-0.7)
P 		42.2
(-3)
P 		58.8
(0.3)
A 		72.5
(3)
P 		30
C 65.3
(0.9)
P 		76.6
(3)
P 		49.1
(-2.2)
P 		45.2
(-2.9)
P 		44.6
(-3)
P 		54.4
(-1.2)
P 		32
avr 47.1
(-1.9) 		75.3
(3) 		49.6
(-1.5) 		41.1
(-3) 		48.1
(-1.8) 		53.5
(-0.8) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6495
Sequence Type Exemplar sequence
Representative Public ID K02D10.4 NCBI
Target Description K02D10.4 /REP_DB=WormBase Gene ID /WP=CE00244 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066540 NCBI Caenorhabditis elegans K02D10.4 (K02D10.4) mRNA, complete cds. 11/11 None
SNAP00000017003 ENSEMBL cdna:SNAP chromosome:CEL140:III:8778503:8779914:-1 11/11 None
GENEFINDER00000017006 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8778503:8779914:-1 11/11 None
K02D10.4 ENSEMBL cdna:known chromosome:CEL140:III:8777810:8779914:-1 gene:K02D10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8778498-8779790(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02D10.4
Entrez Gene 176234 Entrez gene
SwissProt P34495 EMBL-EBI
WormBase CE00244 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28079 Hypothetical protein K02D10.4 [Caenorhabditis elegans] ref|NP_498941.1| K02D10.4 [Caenorhabditis elegans] sp|P34495|YMQ4_CAEEL Hypothetical protein K02D10.4 in chromosome III 1.0E-116
blast CAE62747 Hypothetical protein CBG06911 [Caenorhabditis briggsae] 3.0E-93
blast CAE62747 Hypothetical protein CBG06911 [Caenorhabditis briggsae] 2.0E-83
Sequence
Target Sequence 
>C. ELEGANS:176252_AT
tcgcctatttccaaatatggcttgcaaatattgaagattcacgatgtgatggaggatatt
tgggatcaagtcaaggaccatcatatgaggatgaatactacctcctgtgccgccgccgtc
catcaacgacaacaaaacgtcgcaggatgtctgatgattgtgcaagtaacgagctgaata
gttcaatagttgcttgtacagcatttgttcatgtattcgagacaatggatggacgtgtaa
ctgtcagatattgtcttgatcattgtggacatccagttgaagttgacgatcatcatagaa
gagaaactaaaaagtttgaaaatcgattaacattgaagagaagctcaccgtgtgccacat
atgagctgtgtgatgagagttgtgattgtgagcaatcatcttcatcaatggcttcatctc
catcatcatcagtggatttcgaagatgaagatgcttcaaataataactacaaactacaag
aatcaattgatgcatatgcagtttcaagtctcaatgcaataattaatcaacgtcttgatt
caacagctgatcgtctcaaaacactgacaaaagtgctccaggagttggctgttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCTATTTCCAAATATGGCTTGC 360 597 68 Antisense
CGCCGTCCATCAACGACAACAAAAC 336 257 181 Antisense
AACGTCGCAGGATGTCTGATGATTG 78 145 203 Antisense
GTCTTGATCATTGTGGACATCCAGT 68 469 320 Antisense
TGAAGAGAAGCTCACCGTGTGCCAC 687 573 401 Antisense
CACCGTGTGCCACATATGAGCTGTG 638 199 413 Antisense
GTGAGCAATCATCTTCATCAATGGC 689 483 455 Antisense
CATCAATGGCTTCATCTCCATCATC 159 213 470 Antisense
GATGCATATGCAGTTTCAAGTCTCA 547 413 556 Antisense
GATTCAACAGCTGATCGTCTCAAAA 636 429 604 Antisense
AGTGCTCCAGGAGTTGGCTGTTGAT 103 61 639 Antisense
Sequence Source Affymetrix Proprietary Database