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[176250_s_at]

Description Y119C1B.D /REP_DB=WormBase Gene ID /WP=CE25214 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 29      6grp_total > 38      4grp_total > 31      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 258.6
(1.7)
P 		158
(-3)
A 		202.3
(-0.9)
A 		286.8
(3)
A 		129
B 237
(3)
A 		185.4
(-1.4)
A 		167.4
(-3)
A 		179.1
(-2)
M 		70
C 235.9
(3)
P 		211.2
(1)
A 		201.5
(0.3)
P 		160.7
(-3)
A 		75
avr 243.8
(3) 		184.9
(-3) 		190.4
(-2.4) 		208.9
(-0.6) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 257.9
(-0.3)
P 		309.8
(1)
P 		154.5
(-3)
P 		181.9
(-2.3)
P 		236
(-0.9)
P 		386.9
(3)
P 		232
B 278.7
(2.9)
P 		280.4
(3)
P 		188.1
(-3)
P 		193.8
(-2.6)
P 		277.6
(2.8)
P 		241.4
(0.5)
P 		92
C 427.8
(3)
P 		345.7
(0.9)
P 		198.6
(-3)
A 		204.4
(-2.8)
P 		208.6
(-2.7)
P 		230.8
(-2.2)
P 		229
avr 321.5
(3) 		312
(2.6) 		180.4
(-3) 		193.4
(-2.4) 		240.7
(-0.4) 		286.4
(1.5) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 94.2
(3)
P 		34.3
(-3)
A 		52.9
(-1.1)
A 		42
(-2.2)
A 		60
B 75.6
(3)
A 		45.8
(-1.8)
A 		38.8
(-2.9)
A 		38.2
(-3)
M 		37
C 78.1
(3)
P 		60.7
(1)
A 		70.2
(2.1)
P 		27.1
(-3)
A 		51
avr 82.6
(3) 		46.9
(-1.6) 		54
(-0.7) 		35.8
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 47.5
(-1.9)
P 		110.2
(3)
P 		33.6
(-3)
P 		46.1
(-2)
P 		71.2
(-0.1)
P 		94.2
(1.7)
P 		77
B 97
(1.6)
P 		93.3
(1.3)
P 		45.7
(-3)
P 		51.3
(-2.5)
P 		112.8
(3)
P 		90
(1)
P 		67
C 158.6
(3)
P 		105.5
(0.3)
P 		50.6
(-2.5)
A 		41.1
(-3)
P 		67.5
(-1.7)
P 		77.3
(-1.2)
P 		118
avr 101
(2.8) 		103
(3) 		43.3
(-3) 		46.2
(-2.7) 		83.8
(1.1) 		87.2
(1.4) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176250_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18823
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.D NCBI
Target Description Y119C1B.D /REP_DB=WormBase Gene ID /WP=CE25214 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058983 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-332) (tag-332) mRNA, complete cds. 11/11 None
GENEFINDER00000012140 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4526396:4534799:-1 11/11 None
Y119C1B.8a ENSEMBL cdna:known chromosome:CEL140:I:4526428:4534799:-1 gene:Y119C1B.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182079 6/11 Cross Hyb Matching Probes None
SNAP00000012125 7/11 Cross Hyb Matching Probes None
Y119C1B.8b.2 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172054 2 1 NM_058983 176250_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4526427-4534799(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y119C1B.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39326 Temporarily assigned gene name protein 332, isoform a [Caenorhabditis elegans] ref|NP_491384.1| Temporarily Assigned Gene name family member (tag-332) [Caenorhabditis elegans] 0.0
blast AAO21405 Temporarily assigned gene name protein 332, isoform b [Caenorhabditis elegans] ref|NP_871879.1| Temporarily Assigned Gene name family member (tag-332) [Caenorhabditis elegans] 0.0
blast CAE68907 Hypothetical protein CBG14881 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001487 EMBL-EBI Bromodomain 6.0E-30
Pfam IPR001487 EMBL-EBI Bromodomain 3.7E-28
Sequence
Target Sequence 
>C. ELEGANS:176250_S_AT
gcagtgaatcacagagctcttcgtccagtgatgatgattcagatgatgaggataggccga
gtattccccgtaaatcaggtcaaccaccatcaacatcacgtgaatggaatcaatcatcag
ctcctccaccacgaatgggaggaatgggaggacaaccaccaatgtcacgagtacctgcat
catcatccacatctgtatcagcaatcggaaagaacaacgcagccgcctcgtcgaattcat
atcgttacagatgtttttttgtcaggaaattaaacttaaaaatttccaacaaaaaaaaat
ggaaatcgaaaaaaaattcaacgaaccttgtttttagaagctccaaaacctgcaccagta
ccagcaccaacatcatcaagacctccggcagcaccgagaccaccgtcaaaaccaaagaaa
acggtcgcaaccaacaacgtcggctacgattagatcaccaacggaaagccaacccgggaa
tggtgaagacgagcagaccaggattcagaggatgcggatggaggcaaagcgagcccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTGAATCACAGAGCTCTTCGTC 281 311 1982 Antisense
GAGCTCTTCGTCCAGTGATGATGAT 566 387 1995 Antisense
TATTCCCCGTAAATCAGGTCAACCA 152 663 2043 Antisense
TGGAATCAATCATCAGCTCCTCCAC 232 547 2086 Antisense
CAACCACCAATGTCACGAGTACCTG 672 185 2134 Antisense
CATCCACATCTGTATCAGCAATCGG 207 211 2165 Antisense
GTACCAGCACCAACATCATCAAGAC 19 459 2339 Antisense
TCGCAACCAACAACGTCGGCTACGA 404 601 2406 Antisense
GTCGGCTACGATTAGATCACCAACG 187 473 2420 Antisense
GATCACCAACGGAAAGCCAACCCGG 473 419 2434 Antisense
CGGATGGAGGCAAAGCGAGCCCGCC 62 243 2496 Antisense
Sequence Source Affymetrix Proprietary Database