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[176249_at]

Description Y82E9BL.M /REP_DB=WormBase Gene ID /WP=CE23358 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 33      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 31      4grp_total > 63      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 90.3
(3)
P 		70
(-1.6)
P 		63.9
(-3)
P 		85.2
(1.8)
P 		26
B 100.2
(2)
P 		59
(-3)
P 		108.1
(3)
P 		61
(-2.8)
P 		49
C 102.6
(3)
P 		71.7
(-3)
P 		85.8
(-0.3)
P 		80.5
(-1.3)
P 		31
avr 97.7
(3) 		66.9
(-3) 		85.9
(0.7) 		75.6
(-1.3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 93.4
(-0)
P 		110.2
(1.3)
P 		132.1
(3)
P 		97.5
(0.3)
P 		83.7
(-0.8)
P 		55.8
(-3)
P 		76
B 83.1
(-0.3)
P 		131.6
(3)
P 		77.9
(-0.7)
P 		53.2
(-2.4)
P 		61.4
(-1.8)
P 		44
(-3)
P 		88
C 78.1
(-0.7)
P 		130.1
(2.8)
P 		90.1
(0.1)
P 		133.1
(3)
P 		65.2
(-1.5)
P 		43.3
(-3)
P 		90
avr 84.9
(-0.1) 		124
(3) 		100
(1.1) 		94.6
(0.7) 		70.1
(-1.2) 		47.7
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 32.9
(3)
P 		15.2
(-2.2)
P 		16.7
(-1.8)
P 		12.5
(-3)
P 		20
B 32
(3)
P 		14.6
(-2.5)
P 		25
(0.8)
P 		13
(-3)
P 		19
C 33.9
(3)
P 		20.6
(-0.9)
P 		29.9
(1.8)
P 		13.6
(-3)
P 		20
avr 32.9
(3) 		16.8
(-1.9) 		23.9
(0.3) 		13
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 17.2
(-2.2)
P 		39.2
(3)
P 		28.8
(0.6)
P 		24.7
(-0.4)
P 		25.3
(-0.3)
P 		13.6
(-3)
P 		26
B 28.9
(-0)
P 		43.8
(3)
P 		18.9
(-2)
P 		14.1
(-3)
P 		24.9
(-0.8)
P 		16.4
(-2.5)
P 		30
C 28.9
(0.4)
P 		39.7
(3)
P 		22.9
(-1)
P 		26.8
(-0.1)
P 		21.1
(-1.4)
P 		14.5
(-3)
P 		25
avr 25
(-0.7) 		40.9
(3) 		23.5
(-1) 		21.9
(-1.4) 		23.8
(-0.9) 		14.8
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19044
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.M NCBI
Target Description Y82E9BL.M /REP_DB=WormBase Gene ID /WP=CE23358 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064981
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041765 ENSEMBL cdna:SNAP chromosome:CEL140:III:1308951:1321154:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064981 7/11 Cross Hyb Matching Probes None
Y82E9BL.15 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1315253-1317242(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66036 Hypothetical protein Y82E9BL.12 [Caenorhabditis elegans] ref|NP_497379.1| Y82E9BL.12 [Caenorhabditis elegans] 0.0
blast NP_503794 C31B8.12 [Caenorhabditis elegans] gb|AAG23971.2| Hypothetical protein C31B8.12 [Caenorhabditis elegans] 1.0E-159
blast CAE66163 Hypothetical protein CBG11400 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-38
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.6E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000041765 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:176249_AT
cccatggctatgctaacctgccgaaaagtatgccgaaccttacgatctaccattgacaga
cttggaattctatacggtgacatcagattcggcatttgggaaaatagcgtgactatgaat
tcggacggggttgacttggaatttactgatgcgaatagtgtgactcacgacatactaaac
aggagaatcttaggagacaactatttgggaagtgcattcaaggatttgaaggtgctcttg
gagcacgcaaaaggcttggctatttgtaactactcggaagatgatatatatgcaaccgtt
ttaatagacgtcttgaaagaaaaagaatgcatccacatcaagaaagttgtatttgaatat
ttttcatttaatgatattgtatcactcctgccttacttcaatgctcaagtgctccaggag
attcgaactgaagatagtggccttatagaacaatttgaacgaataattgcgctggatcaa
tggaaaaatgcaaaaaatgccttgcgcacttggcgacgcgaatccaagatttctcatcac
ttctcccgcaagaacgggtgcaagccggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCATGGCTATGCTAACCTGCCGAA 67 259 199 Antisense
TATGCCGAACCTTACGATCTACCAT 594 655 227 Antisense
GTGACATCAGATTCGGCATTTGGGA 145 483 275 Antisense
TGAATTCGGACGGGGTTGACTTGGA 374 549 314 Antisense
GTGACTCACGACATACTAAACAGGA 648 481 358 Antisense
AAGGCTTGGCTATTTGTAACTACTC 114 109 449 Antisense
TCCTGCCTTACTTCAATGCTCAAGT 571 593 584 Antisense
AAAAATGCCTTGCGCACTTGGCGAC 273 129 691 Antisense
CGAATCCAAGATTTCTCATCACTTC 237 253 717 Antisense
TCATCACTTCTCCCGCAAGAACGGG 25 621 732 Antisense
CGCAAGAACGGGTGCAAGCCGGCCG 222 253 745 Antisense
Sequence Source Affymetrix Proprietary Database