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[176247_at]

Description Y82E9BL.A /REP_DB=WormBase Gene ID /WP=CE23417 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 05      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 4.8
(-3)
A 		19.5
(3)
A 		12.3
(0.1)
A 		11.5
(-0.3)
A 		15
B 6.1
(-2.2)
A 		32.9
(3)
A 		10.4
(-1.3)
A 		1.8
(-3)
A 		31
C 5.7
(-3)
A 		24.8
(-0.9)
A 		19.5
(-1.5)
A 		60
(3)
P 		54
avr 5.5
(-3) 		25.7
(3) 		14.1
(-0.4) 		24.4
(2.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 25.1
(2.2)
A 		28.4
(3)
A 		2.9
(-3)
A 		3.3
(-2.9)
A 		16.5
(0.2)
A 		2.9
(-3)
A 		26
B 24.7
(3)
A 		13.3
(-0.1)
A 		2.3
(-3)
A 		11.3
(-0.6)
A 		7.9
(-1.5)
A 		6.2
(-2)
A 		22
C 19.5
(1.9)
A 		23.4
(3)
A 		6.8
(-1.5)
A 		5.5
(-1.9)
A 		4.6
(-2.1)
A 		1.4
(-3)
A 		22
avr 23.1
(3) 		21.7
(2.6) 		4
(-2.8) 		6.7
(-2) 		9.7
(-1.1) 		3.5
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.7
(-3)
A 		4.2
(3)
A 		3.2
(0.6)
A 		1.7
(-3)
A 		3
B 1.9
(-1.8)
A 		8.1
(3)
A 		2.4
(-1.4)
A 		0.4
(-3)
A 		8
C 1.9
(-3)
A 		7.1
(0.8)
A 		6.8
(0.6)
A 		10.1
(3)
P 		8
avr 1.8
(-3) 		6.5
(3) 		4.1
(-0.1) 		4.1
(-0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.6
(-0.5)
A 		10.1
(3)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		5
(-0.2)
A 		0.7
(-2.9)
A 		10
B 8.6
(3)
A 		4.4
(-0.2)
A 		0.6
(-3)
A 		3
(-1.2)
A 		3.2
(-1.1)
A 		2.3
(-1.7)
A 		8
C 7.2
(3)
A 		7.1
(2.9)
A 		1.7
(-1.9)
A 		1.1
(-2.5)
A 		1.5
(-2.1)
A 		0.5
(-3)
A 		7
avr 6.8
(2.6) 		7.2
(3) 		1
(-3) 		1.6
(-2.4) 		3.2
(-0.9) 		1.2
(-2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18993
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.A NCBI
Target Description Y82E9BL.A /REP_DB=WormBase Gene ID /WP=CE23417 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064992 NCBI Caenorhabditis elegans Y82E9BL.1 (Y82E9BL.1) mRNA, complete cds. 11/11 None
SNAP00000041776 ENSEMBL cdna:SNAP chromosome:CEL140:III:1354987:1355290:-1 11/11 None
Y82E9BL.1 ENSEMBL cdna:known chromosome:CEL140:III:1354987:1355410:-1 gene:Y82E9BL.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008931 4/11 Cross Hyb Matching Probes None
SNAP00000008902 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1354986-1355290(-) 95.69 100.0
Public Domain and Genome References
Gene Title
Ensembl Y82E9BL.1
Entrez Gene 190750 Entrez gene
SwissProt Q95XB1 EMBL-EBI
WormBase CE27539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66030 Hypothetical protein Y82E9BL.1 [Caenorhabditis elegans] ref|NP_497393.1| Y82E9BL.1 [Caenorhabditis elegans] 1.0E-57
blast AAK66030 Hypothetical protein Y82E9BL.1 [Caenorhabditis elegans] ref|NP_497393.1| Y82E9BL.1 [Caenorhabditis elegans] 2.0E-44
blast CAE56467 Hypothetical protein CBG24178 [Caenorhabditis briggsae] 3.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497393.1 1 21-43
Y82E9BL.1 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:176247_AT
tctccctgtatttgccaatgcgtgtttgaaaatcaatcagttagctccaccaccatgtgc
ttgcaacgtcctagccattgatcctgctgacgtttataactatgagcctcaagtttcaaa
cttttgggccaataagcctcaatcgctgctcagaaaaccaatccagatagttgatgattg
ctctgtcaagatgtattgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCTGTATTTGCCAATGCGTGT 133 609 33 Antisense
AAAATCAATCAGTTAGCTCCACCAC 649 133 61 Antisense
CTAGCCATTGATCCTGCTGACGTTT 281 225 103 Antisense
TTGATCCTGCTGACGTTTATAACTA 105 705 110 Antisense
GACGTTTATAACTATGAGCCTCAAG 34 379 121 Antisense
GAGCCTCAAGTTTCAAACTTTTGGG 190 383 136 Antisense
AACTTTTGGGCCAATAAGCCTCAAT 456 139 151 Antisense
CAATAAGCCTCAATCGCTGCTCAGA 540 181 162 Antisense
ATCGCTGCTCAGAAAACCAATCCAG 197 37 174 Antisense
GATAGTTGATGATTGCTCTGTCAAG 409 425 198 Antisense
GATTGCTCTGTCAAGATGTATTGTG 399 433 208 Antisense
Sequence Source Affymetrix Proprietary Database