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[176246_at]

Description Y119C1B.E /REP_DB=WormBase Gene ID /WP=CE25215 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 20      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 75      6grp_total > 40      4grp_total > 05      6grp_highest_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1594
1 2 3 4 range
A 840
(-1.3)
P 		395.9
(-3)
P 		416.5
(-2.9)
P 		1954.6
(3)
P 		1559
B 1096.8
(0.1)
P 		438.4
(-2.7)
P 		360.3
(-3)
P 		1783.8
(3)
P 		1424
C 906.4
(-0.7)
P 		428.3
(-2.8)
P 		380.1
(-3)
P 		1780.3
(3)
P 		1400
avr 947.7
(-0.7) 		420.9
(-2.9) 		385.6
(-3) 		1839.6
(3) 		1454

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 726
1 2 3 4 5 6 range
A 1057.6
(1.2)
P 		877
(-0.9)
P 		1216.5
(3)
P 		1053.7
(1.1)
P 		695.4
(-3)
P 		777.3
(-2.1)
P 		521
B 890.9
(-1.1)
P 		1140.2
(3)
P 		973
(0.3)
P 		1011.2
(0.9)
P 		771.1
(-3)
P 		901.4
(-0.9)
P 		369
C 682.2
(-1.4)
P 		992.5
(1.3)
P 		885.9
(0.4)
P 		1198.2
(3)
P 		490.2
(-3)
P 		928.1
(0.7)
P 		708
avr 876.9
(0.1) 		1003.2
(1.8) 		1025.1
(2.1) 		1087.7
(3) 		652.2
(-3) 		868.9
(-0) 		436
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 305.8
(3)
P 		85.9
(-3)
P 		108.9
(-2.4)
P 		286.1
(2.5)
P 		220
B 349.8
(2.4)
P 		108.3
(-2.5)
P 		83.5
(-3)
P 		380.1
(3)
P 		297
C 300.1
(3)
P 		123.1
(-3)
P 		132.5
(-2.7)
P 		300.2
(3)
P 		177
avr 318.6
(2.9) 		105.8
(-3) 		108.3
(-2.9) 		322.1
(3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 195
(-2.7)
P 		311.9
(3)
P 		264.9
(0.7)
P 		267.2
(0.8)
P 		209.8
(-2)
P 		189.2
(-3)
P 		123
B 310
(0.1)
P 		379.5
(3)
P 		236.3
(-3)
P 		267.8
(-1.7)
P 		313.3
(0.2)
P 		336.1
(1.2)
P 		143
C 252.9
(0.7)
P 		302.8
(2.7)
P 		225.5
(-0.4)
P 		241
(0.3)
P 		158.6
(-3)
P 		310.7
(3)
P 		152
avr 252.6
(-1.5) 		331.4
(3) 		242.2
(-2.1) 		258.7
(-1.2) 		227.2
(-3) 		278.7
(-0) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18815
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.E NCBI
Target Description Y119C1B.E /REP_DB=WormBase Gene ID /WP=CE25215 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058982 NCBI Caenorhabditis elegans Y119C1B.6 (Y119C1B.6) mRNA, complete cds. 11/11 None
GENEFINDER00000012134 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4509051:4518466:-1 9/11 None
SNAP00000012124 ENSEMBL cdna:SNAP chromosome:CEL140:I:4517392:4518466:-1 11/11 None
Y119C1B.6 ENSEMBL cdna:known chromosome:CEL140:I:4517392:4518466:-1 gene:Y119C1B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4517391-4518466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119C1B.6
Entrez Gene 191029 Entrez gene
SwissProt Q95Y81 EMBL-EBI
WormBase CE25215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39324 Hypothetical protein Y119C1B.5 [Caenorhabditis elegans] ref|NP_491382.1| Y119C1B.5 [Caenorhabditis elegans] 0.0
blast CAE68902 Hypothetical protein CBG14874 [Caenorhabditis briggsae] 0.0
blast AAK39323 Hypothetical protein Y119C1B.4 [Caenorhabditis elegans] ref|NP_491381.1| Y119C1B.4 [Caenorhabditis elegans] sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial precursor 1.0E-165
blast AAK39319 Hypothetical protein Y119C1B.6 [Caenorhabditis elegans] ref|NP_491383.1| Y119C1B.6 [Caenorhabditis elegans] 6.0E-35
blast CAE68909 Hypothetical protein CBG14884 [Caenorhabditis briggsae] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001857 EMBL-EBI Ribosomal protein L19 7.7E-25
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.0E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012134 12 4-21,247-266,270-289,310-332,347-364,371-390,426-448,461-483,537-559,580-602,606-627,675-697
Sequence
Target Sequence 
>C. ELEGANS:176246_AT
tgcgtcttttggtgataatcatccttgttgcatttttcctctgcacaactgccgagttaa
tggagaaacggagttcaatgggaggatcagcgtttggaggtatcgaccgtatcccactct
cctatttgcgcaaatattatcgacaaaaaacaatgaaaagagatgataatgaattgctag
acttctccccacaaaactctcaattgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTCTTTTGGTGATAATCATCCT 651 583 14 Antisense
TAATCATCCTTGTTGCATTTTTCCT 694 635 29 Antisense
TTGCATTTTTCCTCTGCACAACTGC 444 703 41 Antisense
TCCTCTGCACAACTGCCGAGTTAAT 267 591 50 Antisense
GCACAACTGCCGAGTTAATGGAGAA 398 317 56 Antisense
GAAACGGAGTTCAATGGGAGGATCA 486 357 78 Antisense
ATGGGAGGATCAGCGTTTGGAGGTA 437 49 91 Antisense
TTTGGAGGTATCGACCGTATCCCAC 571 665 106 Antisense
CCACTCTCCTATTTGCGCAAATATT 280 275 127 Antisense
TAATGAATTGCTAGACTTCTCCCCA 668 631 180 Antisense
TTCTCCCCACAAAACTCTCAATTGG 525 693 196 Antisense
Sequence Source Affymetrix Proprietary Database