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[176245_at]

Description Y82E9BL.I /REP_DB=WormBase Gene ID /WP=CE23394 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 35.3
(0.3)
A 		57.7
(3)
A 		8
(-3)
A 		38.3
(0.7)
A 		50
B 29.8
(3)
A 		5.7
(-3)
A 		5.7
(-3)
A 		20.8
(0.8)
A 		24
C 45.7
(3)
M 		11.5
(-2.2)
A 		6.1
(-3)
A 		41.9
(2.4)
P 		40
avr 36.9
(3) 		25
(0.6) 		6.6
(-3) 		33.7
(2.4) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 29.3
(3)
A 		7
(-1.7)
A 		2.8
(-2.6)
A 		0.9
(-3)
A 		6.3
(-1.9)
A 		6.9
(-1.7)
A 		28
B 12.4
(-0.5)
A 		3.1
(-3)
A 		20.5
(1.7)
A 		25.1
(3)
A 		5.5
(-2.3)
A 		16.1
(0.5)
A 		22
C 25.8
(3)
A 		22.2
(2)
A 		25.6
(2.9)
A 		11.1
(-1)
A 		5.4
(-2.6)
A 		3.9
(-3)
A 		22
avr 22.5
(3) 		10.8
(-1.2) 		16.3
(0.8) 		12.4
(-0.6) 		5.7
(-3) 		9
(-1.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.9
(3)
A 		12.5
(2.8)
A 		2.1
(-3)
A 		5.6
(-1.1)
A 		11
B 9.5
(3)
A 		1.4
(-2.9)
A 		1.3
(-3)
A 		4.4
(-0.7)
A 		8
C 15.1
(3)
M 		3.3
(-2.4)
A 		2.1
(-3)
A 		7.1
(-0.7)
P 		13
avr 12.5
(3) 		5.7
(-0.8) 		1.8
(-3) 		5.7
(-0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.4
(3)
A 		2.5
(-0.3)
A 		0.6
(-2.5)
A 		0.2
(-3)
A 		1.9
(-1)
A 		1.7
(-1.3)
A 		5
B 4.3
(0.5)
A 		1
(-3)
A 		5
(1.2)
A 		6.7
(3)
A 		2.3
(-1.6)
A 		6
(2.3)
A 		6
C 9.6
(3)
A 		6.8
(1)
A 		6.5
(0.8)
A 		2.2
(-2.3)
A 		1.7
(-2.7)
A 		1.3
(-3)
A 		8
avr 6.4
(3) 		3.4
(-1.1) 		4
(-0.3) 		3
(-1.6) 		2
(-3) 		3
(-1.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18992
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.I NCBI
Target Description Y82E9BL.I /REP_DB=WormBase Gene ID /WP=CE23394 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064982 NCBI Caenorhabditis elegans Y82E9BL.11 (Y82E9BL.11) mRNA, complete cds. 11/11 None
SNAP00000041767 ENSEMBL cdna:SNAP chromosome:CEL140:III:1313362:1320859:-1 10/11 None
GENEFINDER00000041782 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1319006:1321651:-1 11/11 None
Y82E9BL.11 ENSEMBL cdna:known chromosome:CEL140:III:1319006:1321651:-1 gene:Y82E9BL.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1319005-1321651(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y82E9BL.11
Entrez Gene 190758 Entrez gene
SwissProt Q9GR37 EMBL-EBI
WormBase CE23394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG37976 Hypothetical protein Y82E9BL.11 [Caenorhabditis elegans] ref|NP_497383.1| Y82E9BL.11 [Caenorhabditis elegans] 1.0E-165
blast AAK66037 Hypothetical protein Y82E9BL.14 [Caenorhabditis elegans] ref|NP_497381.2| Y82E9BL.14 [Caenorhabditis elegans] 1.0E-151
blast AAG37976 Hypothetical protein Y82E9BL.11 [Caenorhabditis elegans] ref|NP_497383.1| Y82E9BL.11 [Caenorhabditis elegans] 1.0E-138
blast AAG37975 Hypothetical protein Y82E9BL.10 [Caenorhabditis elegans] ref|NP_497384.1| Y82E9BL.10 [Caenorhabditis elegans] 1.0E-134
blast AAG37975 Hypothetical protein Y82E9BL.10 [Caenorhabditis elegans] ref|NP_497384.1| Y82E9BL.10 [Caenorhabditis elegans] 1.0E-113
blast AAC04395 Hypothetical protein C17B7.11 [Caenorhabditis elegans] ref|NP_503929.1| C17B7.11 [Caenorhabditis elegans] 9.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.5E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.3E-44
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.2E-29
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.3E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.3E-44
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.5E-15
Sequence
Target Sequence 
>C. ELEGANS:176245_AT
tctctctatactcccatatttcaatgcggacatgctggctgtaattcatttatcgatttc
tgacaatattagtcaattcgaaaaaataatatatatggatcaatggaaaagtgcaagatc
cttccatctcagcgatgctcattttgacgatgatcacattaaacatttgtttgactttga
agagttttccattgcaatgtgttacttatcagatgatactgtgatagatatcagagatga
tctcttaacaaggcccacattccgagaatgctgtatagactttggtggttatgaagagga
ggccgatgacatccttaaaatatttgatccggacagtcctagtagatatgagattgaata
ttcgaacgatcagggtaaatttgcaatcaagtgtcaactttatggttactacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTCTATACTCCCATATTTCAAT 690 611 471 Antisense
ATGCGGACATGCTGGCTGTAATTCA 535 41 494 Antisense
GCTGTAATTCATTTATCGATTTCTG 617 295 508 Antisense
CTTCCATCTCAGCGATGCTCATTTT 245 219 591 Antisense
GACTTTGAAGAGTTTTCCATTGCAA 124 373 643 Antisense
TCCATTGCAATGTGTTACTTATCAG 306 591 658 Antisense
GCCCACATTCCGAGAATGCTGTATA 408 287 723 Antisense
GAATGCTGTATAGACTTTGGTGGTT 309 331 736 Antisense
AGAGGAGGCCGATGACATCCTTAAA 355 61 765 Antisense
AAATATTTGATCCGGACAGTCCTAG 123 115 788 Antisense
GTGTCAACTTTATGGTTACTACGAT 483 479 861 Antisense
Sequence Source Affymetrix Proprietary Database