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[176242_at]

Description C30C11.1 /REP_DB=WormBase Gene ID /WP=CE00100 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 76      6grp_total > 30      4grp_total > 17      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1802
1 2 3 4 range
A 931.1
(-3)
P 		1622.1
(-0.7)
P 		1434.9
(-1.3)
P 		2725.6
(3)
P 		1795
B 923.3
(-3)
P 		1249.5
(-1.5)
P 		1160.6
(-1.9)
P 		2256.1
(3)
P 		1333
C 1045.1
(-3)
P 		1441
(-1.1)
P 		1283.2
(-1.8)
P 		2272.4
(3)
P 		1227
avr 966.5
(-3) 		1437.5
(-1.1) 		1292.9
(-1.7) 		2418
(3) 		1452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 1123.5
(1.5)
P 		1108.6
(1.3)
P 		1231.9
(3)
P 		1074.5
(0.8)
P 		928.8
(-1.2)
P 		797
(-3)
P 		435
B 930.2
(-2.7)
P 		1244.2
(3)
P 		1127.6
(0.9)
P 		1100
(0.4)
P 		1029.1
(-0.9)
P 		910.9
(-3)
P 		333
C 838.5
(-2.4)
P 		1167.9
(1.9)
P 		1077.3
(0.7)
P 		1252.2
(3)
P 		794.3
(-3)
P 		844.4
(-2.3)
P 		458
avr 964.1
(-0.9) 		1173.6
(3) 		1145.6
(2.5) 		1142.2
(2.4) 		917.4
(-1.8) 		850.8
(-3) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 339
(-3)
P 		352.1
(-1.7)
P 		375.1
(0.6)
P 		399
(3)
P 		60
B 294.4
(-2.3)
P 		308.6
(-1.9)
P 		268.9
(-3)
P 		480.8
(3)
P 		212
C 346
(-3)
P 		414.3
(1)
P 		447.2
(3)
P 		383.2
(-0.8)
P 		101
avr 326.5
(-3) 		358.3
(-1) 		363.7
(-0.6) 		421
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 207.1
(-2.6)
P 		394.3
(3)
P 		268.3
(-0.8)
P 		272.5
(-0.6)
P 		280.3
(-0.4)
P 		194
(-3)
P 		200
B 323.7
(-0.9)
P 		414.1
(2.8)
P 		273.8
(-3)
P 		291.3
(-2.3)
P 		418.1
(3)
P 		339.7
(-0.3)
P 		144
C 310.8
(0.4)
P 		356.4
(3)
P 		274.2
(-1.7)
P 		251.8
(-3)
P 		257
(-2.7)
P 		282.7
(-1.2)
P 		105
avr 280.5
(-2.6) 		388.3
(3) 		272.1
(-3) 		271.9
(-3) 		318.5
(-0.6) 		272.1
(-3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6580
Sequence Type Exemplar sequence
Representative Public ID C30C11.1 NCBI
Target Description C30C11.1 /REP_DB=WormBase Gene ID /WP=CE00100 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066469(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066469 NCBI Caenorhabditis elegans C30C11.1 (C30C11.1) mRNA, complete cds. 11/11 None
SNAP00000009805 ENSEMBL cdna:SNAP chromosome:CEL140:III:8449670:8450318:1 11/11 None
GENEFINDER00000009806 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8449670:8450318:1 11/11 None
C30C11.1 ENSEMBL cdna:known chromosome:CEL140:III:8449669:8450357:1 gene:C30C11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8449709-8450313(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30C11.1
Entrez Gene 176197 Entrez gene
SwissProt Q04907 EMBL-EBI
WormBase CE00100 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27965 Hypothetical protein C30C11.1 [Caenorhabditis elegans] ref|NP_498870.1| C30C11.1 [Caenorhabditis elegans] sp|Q04907|RM32_CAEEL Putative 39S ribosomal protein L32, mitochondrial precursor 2.0E-95
blast AAA27965 Hypothetical protein C30C11.1 [Caenorhabditis elegans] ref|NP_498870.1| C30C11.1 [Caenorhabditis elegans] sp|Q04907|RM32_CAEEL Putative 39S ribosomal protein L32, mitochondrial precursor 3.0E-95
blast CAE71251 Hypothetical protein CBG18131 [Caenorhabditis briggsae] 4.0E-77
blast CAE71251 Hypothetical protein CBG18131 [Caenorhabditis briggsae] 2.0E-70
blast EAL27073 GA11487-PA [Drosophila pseudoobscura] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:176242_AT
tgatgcgagttttcagtcaccgatcaccacctccttcatttggatttgcttgcgatgtcg
gtgcacatccatcatcaactgcacaaaacttgccaatgacatatggaagtgttcgcgaaa
tgattgacgattttagtattgtttttggagttccaaagtatagaactagcaaaccaaaga
aagtaactcgcaagttctcattcacacgccttcttcaaccgattgataatcttgtgacat
gtccagcgtgctcgaatattcatccatcggacactatttgtgatgcctgctacgccaaag
ttcatcaattgacttcggaaataaaaaaaaaaatgatgcagtacaatccatatgttggag
agaaacaggataaagaagtatatgtgaaattcagaggagaaccagatgcaccggcagcag
ttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGCGAGTTTTCAGTCACCGATC 201 567 23 Antisense
TCACCACCTCCTTCATTTGGATTTG 648 625 46 Antisense
GGATTTGCTTGCGATGTCGGTGCAC 72 511 64 Antisense
GCACATCCATCATCAACTGCACAAA 455 317 85 Antisense
TAACTCGCAAGTTCTCATTCACACG 171 635 206 Antisense
CACGCCTTCTTCAACCGATTGATAA 345 199 227 Antisense
ATCTTGTGACATGTCCAGCGTGCTC 282 31 251 Antisense
CAGCGTGCTCGAATATTCATCCATC 317 203 266 Antisense
ACACTATTTGTGATGCCTGCTACGC 166 111 293 Antisense
GATGCCTGCTACGCCAAAGTTCATC 185 415 304 Antisense
ACCAGATGCACCGGCAGCAGTTGTT 699 85 423 Antisense
Sequence Source Affymetrix Proprietary Database