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[176241_at]

Description Y119C1B.K /REP_DB=WormBase Gene ID /WP=CE25221 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 12      4grp_total > 46      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 68.3
(3)
A 		39.7
(-0.9)
A 		33.1
(-1.8)
A 		24.2
(-3)
A 		44
B 124.1
(3)
A 		73.7
(0.3)
A 		13.4
(-3)
A 		15.4
(-2.9)
A 		111
C 119.4
(3)
A 		23.9
(-2.2)
A 		10.1
(-3)
A 		31.3
(-1.8)
A 		109
avr 103.9
(3) 		45.8
(-1.1) 		18.9
(-3) 		23.6
(-2.7) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 19.6
(-2.4)
A 		132.4
(3)
A 		20.3
(-2.4)
A 		118
(2.3)
A 		7
(-3)
A 		25.5
(-2.1)
A 		125
B 102.9
(3)
A 		69.4
(0.5)
A 		68.4
(0.4)
A 		60.8
(-0.2)
A 		61.4
(-0.1)
A 		23.3
(-3)
A 		80
C 65.7
(0.9)
A 		82.1
(2.1)
A 		95.1
(3)
A 		15.8
(-2.7)
A 		17.7
(-2.5)
A 		11.1
(-3)
A 		84
avr 62.7
(0.4) 		94.6
(3) 		61.3
(0.3) 		64.9
(0.6) 		28.7
(-2.3) 		20
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 24.9
(3)
A 		8.6
(-1.6)
A 		8.6
(-1.6)
A 		3.5
(-3)
A 		21
B 39.6
(3)
A 		18.2
(-0.5)
A 		3.1
(-3)
A 		3.3
(-3)
A 		37
C 39.5
(3)
A 		6.9
(-2.4)
A 		3.5
(-3)
A 		5.3
(-2.7)
A 		36
avr 34.7
(3) 		11.2
(-1.6) 		5.1
(-2.8) 		4
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 3.6
(-2.8)
A 		47.1
(3)
A 		4.4
(-2.7)
A 		29.9
(0.7)
A 		2.1
(-3)
A 		6.2
(-2.5)
A 		45
B 35.8
(3)
A 		23.1
(0.2)
A 		16.6
(-1.3)
A 		16.1
(-1.4)
A 		24.9
(0.6)
A 		8.7
(-3)
A 		27
C 24.4
(2.8)
A 		25.1
(3)
A 		24.2
(2.8)
A 		3.2
(-3)
A 		5.7
(-2.3)
A 		3.7
(-2.9)
A 		22
avr 21.3
(0.5) 		31.8
(3) 		15.1
(-0.9) 		16.4
(-0.6) 		10.9
(-1.9) 		6.2
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18809
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.K NCBI
Target Description Y119C1B.K /REP_DB=WormBase Gene ID /WP=CE25221 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058989 NCBI Caenorhabditis elegans D1007.15 (D1007.15) mRNA, complete cds. 11/11 A 
SNAP00000011273 ENSEMBL cdna:SNAP chromosome:CEL140:I:4557692:4563644:1 11/11 None
GENEFINDER00000011309 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4557692:4566112:1 11/11 None
D1007.15 ENSEMBL cdna:known chromosome:CEL140:I:4557665:4563695:1 gene:D1007.15 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4558652-4559729(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1007.15
Entrez Gene 172058 Entrez gene
SwissProt O01863 EMBL-EBI
WormBase CE34284 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8107.1.S1_AT similar to Protein KIAA0195 cfa
CHICKEN:GGAAFFX.5021.1.S1_AT similar to mKIAA0195 protein gga
HG-U133_PLUS_2:222210_AT KIAA0195 gene product hs
HG-U133A_2:222210_AT KIAA0195 gene product hs
HG-U133A:222210_AT KIAA0195 gene product hs
HG-U133_PLUS_2:202650_S_AT KIAA0195 gene product hs
HG-U133A:202650_S_AT KIAA0195 gene product hs
HG-U133A_2:202650_S_AT KIAA0195 gene product hs
HUGENEFL:D83779_AT KIAA0195 gene product hs
U133_X3P:G7661985_3P_A_AT KIAA0195 gene product hs
U133_X3P:HS.274408.1.A1_3P_AT KIAA0195 gene product hs
HG-U95AV2:38056_AT KIAA0195 gene product hs
HG-U95B:52568_AT KIAA0195 gene product hs
MOUSE430A_2:1426984_AT RIKEN cDNA 2310067B10 gene mm
MOE430A:1426984_AT RIKEN cDNA 2310067B10 gene mm
MOUSE430_2:1426984_AT RIKEN cDNA 2310067B10 gene mm
MG-U74BV2:108767_AT RIKEN cDNA 2310067B10 gene mm
MU19KSUBC:TC41871_AT RIKEN cDNA 2310067B10 gene, mRNA (cDNA clone IMAGE:4215557) mm
RG-U34C:RC_AI176752_AT similar to mKIAA0195 protein (predicted) rn
RAE230A:1389935_AT similar to mKIAA0195 protein (predicted) rn
RAT230_2:1389935_AT similar to mKIAA0195 protein (predicted) rn
RAE230B:1393476_AT similar to mKIAA0195 protein (predicted) rn
RAT230_2:1393476_AT similar to mKIAA0195 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK18921 Hypothetical protein D1007.15 [Caenorhabditis elegans] ref|NP_491390.2| D1007.15 [Caenorhabditis elegans] 0.0
blast CAE74500 Hypothetical protein CBG22251 [Caenorhabditis briggsae] 0.0
blast E87759 protein D1007.15 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491390.2 10 60-77,81-103,254-276,291-313,925-947,957-976,1005-1027,1075-1097,1104-1123,1133-1155
D1007.15 10 60-77,81-103,254-276,291-313,925-947,957-976,1005-1027,1075-1097,1104-1123,1133-1155
SNAP00000011273 9 39-61,213-235,250-272,884-906,916-935,964-986,1034-1056,1063-1082,1092-1114
GENEFINDER00000011309 10 60-77,81-103,254-276,291-313,939-961,971-990,1019-1041,1089-1111,1118-1137,1147-1169
Sequence
Target Sequence 
>C. ELEGANS:176241_AT
gccagggcaggtggctccatgtaactgtgagacattcgatggccgagttctagctgaagg
cgatcggctcagctgggatatcaaatccgataagaagtctggatttgtagatccacttga
gcctgtttatgctcgcgttacatgctacccaatcaagaatcatctagaaacagccctatc
agctgatgatagtcctttgcaatttgactatcaattacaatatatgatccataatgtttt
tgagcattatgtgataccagttgctttgctctgctcaattctcggaacaattgtgcgatt
ctgttactctgacgatgaaaatttattcgggaccagatttgtgttcgctgtgccaagtct
tactgtgctcccacttctgatccttcaactcccacttcttcttcattttgtcaagtttat
aaataatcgagaagtagcaaagttcctgggattaccagatgatttcgagtcttgtaagga
tttggtcagcatattatcaagtattactgggaccagttttgttgataaaaaaggcatttt
gtcatgtgcccatccgtcgatcgagaaagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGGGCAGGTGGCTCCATGTAAC 150 279 168 Antisense
GACATTCGATGGCCGAGTTCTAGCT 424 371 198 Antisense
GTTCTAGCTGAAGGCGATCGGCTCA 310 443 214 Antisense
GTAGATCCACTTGAGCCTGTTTATG 700 455 274 Antisense
GTTTATGCTCGCGTTACATGCTACC 605 449 292 Antisense
TGTGATACCAGTTGCTTTGCTCTGC 450 555 417 Antisense
TGTGCGATTCTGTTACTCTGACGAT 90 557 459 Antisense
AGATTTGTGTTCGCTGTGCCAAGTC 516 65 502 Antisense
CCCACTTCTTCTTCATTTTGTCAAG 280 259 558 Antisense
AGGCATTTTGTCATGTGCCCATCCG 645 53 699 Antisense
TGCCCATCCGTCGATCGAGAAAGTC 1 583 714 Antisense
Sequence Source Affymetrix Proprietary Database