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[176239_s_at]

Description Y119C1B.F /REP_DB=WormBase Gene ID /WP=CE25216 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 41      6grp_total > 14      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 881
1 2 3 4 range
A 901.8
(0.7)
P 		901.6
(0.7)
P 		1186.5
(3)
P 		440.9
(-3)
P 		746
B 954.5
(1)
P 		958.6
(1.1)
P 		1231.1
(3)
P 		387.3
(-3)
P 		844
C 969.5
(0.8)
P 		1060.4
(1.5)
P 		1268.1
(3)
P 		439.8
(-3)
P 		828
avr 941.9
(0.9) 		973.5
(1.1) 		1228.6
(3) 		422.7
(-3) 		806

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 931.2
(3)
P 		846.9
(1.6)
P 		738.4
(-0.2)
P 		744.8
(-0.1)
P 		630.5
(-2)
P 		570.3
(-3)
P 		361
B 824.9
(1.2)
P 		863.9
(3)
P 		747.4
(-2.2)
P 		752.1
(-2)
P 		762.9
(-1.5)
P 		730.3
(-3)
P 		134
C 736.3
(1.3)
P 		790.2
(3)
P 		714.5
(0.6)
P 		725
(0.9)
P 		603.3
(-3)
P 		687.5
(-0.3)
P 		187
avr 830.8
(2.9) 		833.7
(3) 		733.4
(-0.5) 		740.6
(-0.3) 		665.6
(-2.9) 		662.7
(-3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 328.3
(3)
P 		195.7
(-0)
P 		310.2
(2.6)
P 		64.5
(-3)
P 		264
B 304.4
(3)
P 		236.8
(1.2)
P 		285.3
(2.5)
P 		82.5
(-3)
P 		222
C 320.9
(1)
P 		304.9
(0.8)
P 		442
(3)
P 		74.2
(-3)
P 		368
avr 317.9
(2.4) 		245.8
(0.8) 		345.8
(3) 		73.7
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 171.7
(-1.8)
P 		301.2
(3)
P 		160.8
(-2.2)
P 		188.9
(-1.1)
P 		190.3
(-1.1)
P 		138.8
(-3)
P 		162
B 287
(1.9)
P 		287.6
(2)
P 		181.5
(-3)
P 		199.2
(-2.2)
P 		310
(3)
P 		272.3
(1.2)
P 		129
C 272.9
(3)
P 		241.1
(1.5)
P 		181.9
(-1.3)
P 		145.8
(-3)
P 		195.2
(-0.7)
P 		230.2
(1)
P 		127
avr 243.9
(1.1) 		276.6
(3) 		174.7
(-3) 		178
(-2.8) 		231.8
(0.4) 		213.8
(-0.7) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176239_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18807
Sequence Type Exemplar sequence
Representative Public ID Y119C1B.F NCBI
Target Description Y119C1B.F /REP_DB=WormBase Gene ID /WP=CE25216 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058980 NCBI Caenorhabditis elegans Y119C1B.4 (Y119C1B.4) mRNA, complete cds. 11/11 None
SNAP00000012122 ENSEMBL cdna:SNAP chromosome:CEL140:I:4509051:4511125:-1 11/11 None
GENEFINDER00000012134 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4509051:4518466:-1 11/11 None
Y119C1B.4 ENSEMBL cdna:known chromosome:CEL140:I:4509037:4511127:-1 gene:Y119C1B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4509050-4516057(-) 99.26 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119C1B.4
Entrez Gene 172052 Entrez gene
SwissProt Q95Y83 EMBL-EBI
WormBase CE27233 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586684_AT similar to 39S ribosomal protein L19, mitochondrial precursor (L19mt) (MRP-L19) (MRP-L15) cfa
CANINE_2:CFA.18909.1.S1_S_AT similar to 39S ribosomal protein L19, mitochondrial precursor (L19mt) (MRP-L19) (MRP-L15) cfa
CANINE_2:CFA.3408.1.A1_S_AT similar to 39S ribosomal protein L19, mitochondrial precursor (L19mt) (MRP-L19) (MRP-L15) cfa
CANINE_2:CFAAFFX.13009.1.S1_AT similar to 39S ribosomal protein L19, mitochondrial precursor (L19mt) (MRP-L19) (MRP-L15) cfa
DROSOPHILA_2:1623366_AT mitochondrial ribosomal protein L19 dm
DROSGENOME1:154683_AT mitochondrial ribosomal protein L19 dm
CHICKEN:GGA.15755.1.S1_AT mitochondrial ribosomal protein L19 gga
CHICKEN:GGA.9754.1.S1_AT mitochondrial ribosomal protein L19 gga
HG-U133A:203465_AT mitochondrial ribosomal protein L19 hs
HG-U133_PLUS_2:203465_AT mitochondrial ribosomal protein L19 hs
HG-U133A_2:203465_AT mitochondrial ribosomal protein L19 hs
HU35KSUBD:RC_F03605_F_AT mitochondrial ribosomal protein L19 hs
HUGENEFL:D14660_AT mitochondrial ribosomal protein L19 hs
U133_X3P:G7661911_3P_AT mitochondrial ribosomal protein L19 hs
HG-U95AV2:37174_AT mitochondrial ribosomal protein L19 hs
HG-U133_PLUS_2:238448_AT Mitochondrial ribosomal protein L19 hs
HG-U133B:238448_AT Mitochondrial ribosomal protein L19 hs
HG-U95C:56770_AT Mitochondrial ribosomal protein L19 hs
HU35KSUBC:RC_W72913_AT Mitochondrial ribosomal protein L19 hs
MOUSE430_2:1440324_AT mitochondrial ribosomal protein L19 mm
MOE430B:1440324_AT mitochondrial ribosomal protein L19 mm
MU11KSUBA:AA666971_F_AT mitochondrial ribosomal protein L19 mm
MG-U74BV2:107030_AT mitochondrial ribosomal protein L19 mm
MOE430A:1421914_S_AT mitochondrial ribosomal protein L19 mm
MOUSE430A_2:1421914_S_AT mitochondrial ribosomal protein L19 mm
MOUSE430_2:1421914_S_AT mitochondrial ribosomal protein L19 mm
MOE430A:1421913_AT mitochondrial ribosomal protein L19 mm
MOUSE430A_2:1421913_AT mitochondrial ribosomal protein L19 mm
MOUSE430_2:1421913_AT mitochondrial ribosomal protein L19 mm
MOE430A:1450405_AT mitochondrial ribosomal protein L19 mm
MOUSE430A_2:1450405_AT mitochondrial ribosomal protein L19 mm
MOUSE430_2:1450405_AT mitochondrial ribosomal protein L19 mm
MU19KSUBC:TC35263_AT Mitochondrial ribosomal protein L19, mRNA (cDNA clone IMAGE:5029482) mm
MU19KSUBC:TC40934_AT Mitochondrial ribosomal protein L19, mRNA (cDNA clone IMAGE:5029482) mm
RG-U34B:RC_AA925128_AT ribosomal protein, mitochondrial, L15 rn
RAE230A:1373477_AT ribosomal protein, mitochondrial, L15 rn
RAT230_2:1373477_AT ribosomal protein, mitochondrial, L15 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39324 Hypothetical protein Y119C1B.5 [Caenorhabditis elegans] ref|NP_491382.1| Y119C1B.5 [Caenorhabditis elegans] 0.0
blast CAE68902 Hypothetical protein CBG14874 [Caenorhabditis briggsae] 0.0
blast AAK39323 Hypothetical protein Y119C1B.4 [Caenorhabditis elegans] ref|NP_491381.1| Y119C1B.4 [Caenorhabditis elegans] sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial precursor 1.0E-166
blast AAK39323 Hypothetical protein Y119C1B.4 [Caenorhabditis elegans] ref|NP_491381.1| Y119C1B.4 [Caenorhabditis elegans] sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial precursor 1.0E-165
blast CAE68901 Hypothetical protein CBG14873 [Caenorhabditis briggsae] 1.0E-153
blast EAA01492 ENSANGP00000012103 [Anopheles gambiae str. PEST] ref|XP_322023.2| ENSANGP00000012103 [Anopheles gambiae str. PEST] 1.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001857 EMBL-EBI Ribosomal protein L19 7.7E-25
Pfam IPR001857 EMBL-EBI Ribosomal protein L19 7.7E-25
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.0E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012134 12 4-21,247-266,270-289,310-332,347-364,371-390,426-448,461-483,537-559,580-602,606-627,675-697
Sequence
Target Sequence 
>C. ELEGANS:176239_S_AT
gttggctcaattgttgccgtcacgtcttctgacaaaaatctgggatccaaagaacatcga
tttgttggaatttgtattcgtcgcgaaaaagaaggacttctccatcaatttacgcttaga
aatactatcgaaaatattggagtggaagttgtctacgatctttacaatccaacaatcaag
aaaattgaaactctgaaactggaaaaacgtcttgataacgatttgagctatttggttgat
gctcttccagaatattccacttttgattttcatatggaaccacaggcacatccagcagga
acccctattccagttaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCTCAATTGTTGCCGTCACGT 575 435 2647 Antisense
TTGCCGTCACGTCTTCTGACAAAAA 78 703 2660 Antisense
GTTGGAATTTGTATTCGTCGCGAAA 171 435 2710 Antisense
GACTTCTCCATCAATTTACGCTTAG 318 371 2741 Antisense
TTGGAGTGGAAGTTGTCTACGATCT 242 709 2783 Antisense
GTCTACGATCTTTACAATCCAACAA 300 469 2797 Antisense
AGCTATTTGGTTGATGCTCTTCCAG 312 79 2872 Antisense
TGCTCTTCCAGAATATTCCACTTTT 410 581 2886 Antisense
GAATATTCCACTTTTGATTTTCATA 52 327 2896 Antisense
TATGGAACCACAGGCACATCCAGCA 241 655 2919 Antisense
GCAGGAACCCCTATTCCAGTTAATG 624 219 2941 Antisense
Sequence Source Affymetrix Proprietary Database