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[176238_at]

Description Y71H2AM.O /REP_DB=WormBase Gene ID /WP=CE26269 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 20      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 24.4
(3)
A 		12.9
(-1.3)
A 		14.8
(-0.6)
A 		8.4
(-3)
A 		16
B 5.9
(-2.9)
A 		5.4
(-3)
A 		60.1
(3)
A 		12.2
(-2.3)
A 		55
C 8.5
(-2.6)
A 		11.2
(-2.2)
A 		45
(3)
A 		5.7
(-3)
A 		39
avr 12.9
(-2.2) 		9.8
(-2.8) 		40
(3) 		8.8
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.4
(-2.6)
A 		6.8
(2.1)
A 		7.7
(3)
A 		5.8
(1)
A 		2
(-3)
A 		7.3
(2.6)
A 		6
B 4.5
(-1)
A 		4
(-1.4)
A 		9.1
(3)
A 		3.5
(-1.9)
A 		2.2
(-3)
A 		4.6
(-0.9)
A 		7
C 4.8
(-1.2)
A 		13.4
(3)
A 		4.2
(-1.5)
A 		5.4
(-0.9)
A 		1.2
(-3)
A 		4.6
(-1.3)
A 		12
avr 3.9
(-1) 		8.1
(3) 		7
(2) 		4.9
(-0) 		1.8
(-3) 		5.5
(0.5) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.9
(3)
A 		2.8
(-1.8)
A 		3.9
(-0.9)
A 		1.2
(-3)
A 		8
B 1.9
(-2.7)
A 		1.3
(-3)
A 		13.9
(3)
A 		2.6
(-2.4)
A 		13
C 2.8
(-2.3)
A 		3.2
(-2.1)
A 		15.7
(3)
A 		1
(-3)
A 		15
avr 4.5
(-1.2) 		2.4
(-2.5) 		11.2
(3) 		1.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.4
(3)
A 		1.7
(0.9)
A 		1.5
(0.3)
A 		0.6
(-2.4)
A 		1.8
(1.2)
A 		2
B 1.6
(0.2)
A 		1.3
(-1.2)
A 		2.2
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.7
(0.7)
A 		1
C 1.8
(-0.7)
A 		4.1
(3)
A 		1.1
(-1.9)
A 		1.1
(-1.9)
A 		0.4
(-3)
A 		1.5
(-1.2)
A 		4
avr 1.3
(-0.9) 		2.6
(3) 		1.7
(0.3) 		1.2
(-1.2) 		0.6
(-3) 		1.7
(0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18928
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.O NCBI
Target Description Y71H2AM.O /REP_DB=WormBase Gene ID /WP=CE26269 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065203 NCBI Caenorhabditis elegans Y71H2AM.8 (Y71H2AM.8) mRNA, complete cds. 11/11 None
GENEFINDER00000014462 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2700931:2707047:1 11/11 None
SNAP00000014434 ENSEMBL cdna:SNAP chromosome:CEL140:III:2701071:2707047:1 11/11 None
Y71H2AM.8 ENSEMBL cdna:known chromosome:CEL140:III:2700931:2705849:1 gene:Y71H2AM.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2700930-2705849(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.8
Entrez Gene 190607 Entrez gene
SwissProt Q9BL48 EMBL-EBI
WormBase CE38660 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265021_AT SET domain-containing protein at
Protein Similarities
Method ID Description E-Value
blast AAK29971 Hypothetical protein Y71H2AM.8 [Caenorhabditis elegans] ref|NP_497604.2| Y71H2AM.8 [Caenorhabditis elegans] 0.0
blast CAE65000 Hypothetical protein CBG09838 [Caenorhabditis briggsae] 0.0
blast CAE65000 Hypothetical protein CBG09838 [Caenorhabditis briggsae] 1.0E-153
blast CAG31024 hypothetical protein [Gallus gallus] ref|NP_001006486.1| hypothetical protein LOC423445 [Gallus gallus] 6.0E-30
blast XP_393639 PREDICTED: hypothetical protein XP_393639 [Apis mellifera] 6.0E-30
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.09999990463257
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 5.80000019073486
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.80000019073486
Pfam IPR001214 EMBL-EBI Nuclear protein SET 2.8E-51
Pfam IPR001214 EMBL-EBI Nuclear protein SET 2.8E-51
Sequence
Target Sequence 
>C. ELEGANS:176238_AT
gttggccatcgcgaagaacaagatctacgaagcggcacagagacgaaaagatgcacggaa
tgcgatggaaactccgattttctataatgttccgtttaacgtcgcgaatttcacgccgaa
gctgtatttctgggcggttggagttgtgacgacaagagttaatatggttccaagtgaaaa
tcaagttggagaagatggaaatccggttattattccagcattaatcccagtgctagatat
ggcgaatcacgaaaatgtgctcacagatgtgctcactgagccaattgaagatcttgtatg
ctattcaccagaagaagaatgtgcagttataacaagtcattgtgatgtaaaagctggaaa
tgaagttacaatattttatggatgccgtagtaaaggagaacatttacttcataatggatt
cgtaccaatttatcacggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCCATCGCGAAGAACAAGATC 279 435 666 Antisense
GATCTACGAAGCGGCACAGAGACGA 6 419 687 Antisense
ACTCCGATTTTCTATAATGTTCCGT 295 99 736 Antisense
TAATGTTCCGTTTAACGTCGCGAAT 23 637 750 Antisense
ACGTCGCGAATTTCACGCCGAAGCT 161 95 764 Antisense
GCCGAAGCTGTATTTCTGGGCGGTT 274 285 780 Antisense
CTGGGCGGTTGGAGTTGTGACGACA 151 241 795 Antisense
ATTATTCCAGCATTAATCCCAGTGC 693 13 874 Antisense
ATGTGCTCACAGATGTGCTCACTGA 562 49 920 Antisense
GAAGATCTTGTATGCTATTCACCAG 147 339 952 Antisense
GGATTCGTACCAATTTATCACGGAA 199 509 1081 Antisense
Sequence Source Affymetrix Proprietary Database