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[176236_at]

Description Y82E9BL.E /REP_DB=WormBase Gene ID /WP=CE23421 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 21      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 53.7
(0.7)
A 		78.3
(3)
P 		40.7
(-0.5)
A 		13.9
(-3)
A 		64
B 36.1
(0.2)
A 		53.2
(3)
P 		16
(-3)
A 		18.7
(-2.6)
A 		37
C 30.2
(-2.9)
A 		29.6
(-3)
A 		34.7
(-2.6)
A 		99.2
(3)
M 		70
avr 40
(-0.5) 		53.7
(3) 		30.5
(-3) 		43.9
(0.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 54.9
(1.9)
A 		65.9
(3)
A 		53.2
(1.7)
A 		18.9
(-1.8)
A 		11.6
(-2.6)
A 		7.6
(-3)
A 		58
B 20.3
(-1.2)
A 		38.9
(0.7)
A 		60.7
(3)
A 		39.1
(0.8)
P 		4.5
(-2.9)
A 		3.1
(-3)
A 		58
C 25.1
(-1.1)
A 		37.1
(0.1)
A 		20
(-1.6)
A 		47.8
(1.1)
A 		68.4
(3)
A 		4.7
(-3)
A 		64
avr 33.4
(1) 		47.3
(3) 		44.6
(2.6) 		35.3
(1.3) 		28.2
(0.3) 		5.1
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.6
(3)
A 		17
(2.1)
P 		10.7
(-0)
A 		2
(-3)
A 		18
B 11.5
(2)
A 		13.1
(3)
P 		3.7
(-3)
A 		4
(-2.8)
A 		9
C 10
(-1.9)
A 		8.5
(-3)
A 		12.1
(-0.4)
A 		16.7
(3)
M 		8
avr 13.7
(3) 		12.9
(2.2) 		8.8
(-1.8) 		7.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.1
(-0.7)
A 		23.4
(3)
A 		11.6
(-0.3)
A 		4.8
(-2.2)
A 		3.5
(-2.6)
A 		1.9
(-3)
A 		22
B 7.1
(-0.4)
A 		12.9
(2.2)
A 		14.7
(3)
A 		10.4
(1.1)
P 		1.8
(-2.7)
A 		1.2
(-3)
A 		14
C 9.3
(-0.7)
A 		11.3
(-0.2)
A 		5.1
(-2)
A 		9.6
(-0.7)
A 		22.1
(3)
A 		1.6
(-3)
A 		21
avr 8.8
(0) 		15.9
(3) 		10.5
(0.7) 		8.3
(-0.2) 		9.1
(0.1) 		1.6
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19026
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.E NCBI
Target Description Y82E9BL.E /REP_DB=WormBase Gene ID /WP=CE23421 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064984 NCBI Caenorhabditis elegans Y82E9BL.8 (Y82E9BL.8) mRNA, complete cds. 11/11 None
SNAP00000041771 ENSEMBL cdna:SNAP chromosome:CEL140:III:1336802:1340323:-1 11/11 None
GENEFINDER00000041787 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1336802:1342484:-1 11/11 None
Y82E9BL.8 ENSEMBL cdna:known chromosome:CEL140:III:1336697:1340323:-1 gene:Y82E9BL.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1336801-1345784(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y82E9BL.8
Entrez Gene 3565750 Entrez gene
SwissProt Q95XB7 EMBL-EBI
WormBase CE27550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66035 Hypothetical protein Y82E9BL.8 [Caenorhabditis elegans] ref|NP_497385.1| Y82E9BL.8 [Caenorhabditis elegans] 0.0
blast AAK66034 Hypothetical protein Y82E9BL.7 [Caenorhabditis elegans] 1.0E-138
blast NP_497386 Y82E9BL.7 [Caenorhabditis elegans] 1.0E-119
blast AAC68928 Hypothetical protein T12B5.2 [Caenorhabditis elegans] ref|NP_497305.1| T12B5.2 [Caenorhabditis elegans] 2.0E-50
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 5.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.9E-43
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.5E-13
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.9E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.2E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.9E-43
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-10
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.5E-13
Sequence
Target Sequence 
>C. ELEGANS:176236_AT
ggccatcaaagatctggagctcctatcaaagcatacatcaaggctttgtcttcgaaatgt
cactgggaataaagactataatgtccaagctctgaccaacaccttggaagcccctgtcca
aatgaaaaaagtaattttttggagcttctcgttcaatgatttgctctcaattctgccgta
ttttaacgcagaagacatggaatttaataatattcacgccacgaaaattaaaattgaaat
gatttctcatctggaacagtggaagcaggctaagattgtctcattttcaaattttacctt
tggtagtcatctgatcgaaaacttttttcactttgagaggttcactattaaaatggagga
tttcccgttggaaagtgcgattaagattcgagataatctaatgaaaagaataacatttaa
cagttgccttatcgaattccatggcgacaatcgacttgagcttgcaagagttttcaaacc
cg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCATCAAAGATCTGGAGCTCCTA 673 543 2253 Antisense
GGCTTTGTCTTCGAAATGTCACTGG 476 537 2294 Antisense
TAATGTCCAAGCTCTGACCAACACC 183 635 2331 Antisense
CCTTGGAAGCCCCTGTCCAAATGAA 206 271 2354 Antisense
GCTTCTCGTTCAATGATTTGCTCTC 116 307 2396 Antisense
TGCTCTCAATTCTGCCGTATTTTAA 264 581 2414 Antisense
GCAGGCTAAGATTGTCTCATTTTCA 460 311 2517 Antisense
TTACCTTTGGTAGTCATCTGATCGA 257 683 2546 Antisense
AACAGTTGCCTTATCGAATTCCATG 80 137 2671 Antisense
GGCGACAATCGACTTGAGCTTGCAA 709 541 2695 Antisense
GAGCTTGCAAGAGTTTTCAAACCCG 114 389 2710 Antisense
Sequence Source Affymetrix Proprietary Database