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[176234_at]

Description Y71H2AM.N /REP_DB=WormBase Gene ID /WP=CE26268 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 178.1
(3)
P 		26.1
(-3)
A 		76.1
(-1)
A 		113.4
(0.4)
A 		152
B 194.9
(3)
P 		91.4
(-0.3)
A 		31
(-2.2)
A 		6.1
(-3)
A 		189
C 124.4
(1.1)
P 		24.1
(-3)
A 		81.4
(-0.6)
A 		170.1
(3)
P 		146
avr 165.8
(3) 		47.2
(-3) 		62.8
(-2.2) 		96.5
(-0.5) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 57.7
(-1.7)
A 		85.3
(0.2)
A 		59.2
(-1.6)
A 		112.9
(2.2)
M 		38.6
(-3)
A 		124.9
(3)
P 		86
B 154.7
(3)
P 		106.8
(0.1)
A 		58.3
(-2.8)
A 		81.6
(-1.4)
A 		55.2
(-3)
A 		74.2
(-1.9)
A 		100
C 140.7
(3)
A 		48.8
(-3)
A 		93.2
(-0.1)
A 		93.1
(-0.1)
A 		89.2
(-0.4)
A 		70.8
(-1.6)
P 		92
avr 117.7
(3) 		80.3
(-1) 		70.2
(-2) 		95.9
(0.7) 		61
(-3) 		90
(0.1) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 64.8
(3)
P 		5.7
(-3)
A 		19.9
(-1.6)
A 		16.6
(-1.9)
A 		59
B 62.2
(3)
P 		22.6
(-0.9)
A 		7.2
(-2.4)
A 		1.3
(-3)
A 		61
C 41.2
(3)
P 		6.9
(-3)
A 		28.4
(0.8)
A 		28.7
(0.8)
P 		34
avr 56.1
(3) 		11.7
(-3) 		18.5
(-2.1) 		15.5
(-2.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 10.6
(-3)
A 		30.3
(3)
A 		12.9
(-2.3)
A 		28.6
(2.5)
M 		11.7
(-2.7)
A 		30.4
(3)
P 		20
B 53.8
(3)
P 		35.5
(0.2)
A 		14.2
(-3)
A 		21.6
(-1.9)
A 		22.4
(-1.8)
A 		27.7
(-1)
A 		40
C 52.2
(3)
A 		14.9
(-3)
A 		23.7
(-1.6)
A 		18.7
(-2.4)
A 		28.9
(-0.7)
A 		23.7
(-1.6)
P 		37
avr 38.9
(3) 		26.9
(-0.3) 		16.9
(-3) 		23
(-1.3) 		21
(-1.9) 		27.3
(-0.2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18959
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.N NCBI
Target Description Y71H2AM.N /REP_DB=WormBase Gene ID /WP=CE26268 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065202 NCBI Caenorhabditis elegans Y71H2AM.9 (Y71H2AM.9) mRNA, complete cds. 11/11 None
SNAP00000014433 ENSEMBL cdna:SNAP chromosome:CEL140:III:2691428:2707619:-1 10/11 None
GENEFINDER00000014467 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2691428:2698800:-1 10/11 None
Y71H2AM.9 ENSEMBL cdna:known chromosome:CEL140:III:2690168:2700134:-1 gene:Y71H2AM.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2693542-2700134(-) 97.55 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.9
Entrez Gene 190608 Entrez gene
WormBase CE37454 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260489_AT cation efflux family protein / metal tolerance protein, putative (MTPc4) at
CANINE_2:CFAAFFX.3603.1.S1_AT similar to solute carrier family 30 (zinc transporter), member 9 cfa
DROSOPHILA_2:1630202_A_AT dm
DROSGENOME1:147110_AT dm
CHICKEN:GGA.10399.1.S1_S_AT similar to solute carrier family 30 (zinc transporter), member 9; expressed in human embryonic lung; chromosome 4 open reading frame 1 gga
CHICKEN:GGAAFFX.9037.1.S1_AT similar to solute carrier family 30 (zinc transporter), member 9; expressed in human embryonic lung; chromosome 4 open reading frame 1 gga
HG-FOCUS:202614_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U133A_2:202614_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U133A:202614_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U133_PLUS_2:202614_AT solute carrier family 30 (zinc transporter), member 9 hs
HU35KSUBA:AA400361_AT solute carrier family 30 (zinc transporter), member 9 hs
HU35KSUBC:RC_AA427879_S_AT solute carrier family 30 (zinc transporter), member 9 hs
U133_X3P:G7656945_3P_X_AT solute carrier family 30 (zinc transporter), member 9 hs
U133_X3P:G7656945_3P_AT solute carrier family 30 (zinc transporter), member 9 hs
U133_X3P:HS.270956.1.S1_3P_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U133_PLUS_2:229500_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U133B:229500_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U95AV2:36013_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U95C:64177_AT solute carrier family 30 (zinc transporter), member 9 hs
HG-U133_PLUS_2:237051_AT Solute carrier family 30 (zinc transporter), member 9 hs
HG-U133B:237051_AT Solute carrier family 30 (zinc transporter), member 9 hs
HG-U95D:71506_R_AT Solute carrier family 30 (zinc transporter), member 9 hs
HU35KSUBB:RC_AA016310_AT Solute carrier family 30 (zinc transporter), member 9 hs
HU35KSUBB:RC_R34832_AT Solute carrier family 30 (zinc transporter), member 9 hs
HU35KSUBB:RC_R56872_AT Solute carrier family 30 (zinc transporter), member 9 hs
U133_X3P:HS.270674.0.A1_3P_AT Solute carrier family 30 (zinc transporter), member 9 hs
MG-U74AV2:96845_AT solute carrier family 30 (zinc transporter), member 9 mm
MOE430A:1426668_AT solute carrier family 30 (zinc transporter), member 9 mm
MOUSE430A_2:1426668_AT solute carrier family 30 (zinc transporter), member 9 mm
MOUSE430_2:1426668_AT solute carrier family 30 (zinc transporter), member 9 mm
MG-U74BV2:117122_AT Solute carrier family 30 (zinc transporter), member 9, mRNA (cDNA clone IMAGE:4021233) mm
MU19KSUBA:TC25094_AT Solute carrier family 30 (zinc transporter), member 9, mRNA (cDNA clone IMAGE:4021233) mm
MU19KSUBC:TC39819_AT Solute carrier family 30 (zinc transporter), member 9, mRNA (cDNA clone IMAGE:4021233) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497603 Y71H2AM.9 [Caenorhabditis elegans] 0.0
blast ABA00161 Hypothetical protein Y71H2AM.9 [Caenorhabditis elegans] 0.0
blast CAE64999 Hypothetical protein CBG09837 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 9.4E-48
Pfam IPR002524 EMBL-EBI Cation efflux protein 8.1E-47
Pfam IPR002524 EMBL-EBI Cation efflux protein 2.6E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497603.2 2 281-303,313-335
Y71H2AM.9 2 281-303,313-335
SNAP00000014433 2 173-195,205-227
GENEFINDER00000014467 2 236-258,268-290
Sequence
Target Sequence 
>C. ELEGANS:176234_AT
taagggagccgatcgtgttgtcgctatcgcattcacacttaatctttgtgatatggctat
gaagttcactgcagcatatctgacaggatcaaagtcactattcgcagaagcaattcatag
tgcaatggatacatgtaatcaattaattcttctactcggaatacgatattcggctaaaaa
tcccgatttactgttcccttatggatatggaaacatgcgatacgtgacgtcattgatttc
tggatgtggaattatggcatttggatgtggattatcaatgtatcatggaataagtggact
tttacatccagaaccacttgaaccattgacttatgcttattatgcacttttcatgtcact
atgcttccaaggaacatctgcaattacagcttatcgagaagttttcgcaaaagccaaaaa
agccaatatcagcatttggaattatgtacgaacatctgctgatccatccctaaatgttgt
tctacttgaagacactgccgccgttacaggagtcggaattgctctttgtgccatttcact
ttcgtcattccttaactcaccaattccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGGGAGCCGATCGTGTTGTCGCT 495 637 624 Antisense
GCTATCGCATTCACACTTAATCTTT 583 303 646 Antisense
TCCCGATTTACTGTTCCCTTATGGA 597 595 804 Antisense
GCACTTTTCATGTCACTATGCTTCC 473 315 967 Antisense
TGTACGAACATCTGCTGATCCATCC 547 559 1068 Antisense
GATCCATCCCTAAATGTTGTTCTAC 226 415 1084 Antisense
TGTTCTACTTGAAGACACTGCCGCC 676 561 1101 Antisense
ACTGCCGCCGTTACAGGAGTCGGAA 514 91 1117 Antisense
GGAGTCGGAATTGCTCTTTGTGCCA 677 515 1132 Antisense
TTGTGCCATTTCACTTTCGTCATTC 401 707 1149 Antisense
CATTCCTTAACTCACCAATTCCGGA 124 215 1169 Antisense
Sequence Source Affymetrix Proprietary Database