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[176232_at]

Description K02D10.2 /REP_DB=WormBase Gene ID /WP=CE00242 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 10.6
(0.9)
A 		11.2
(1.2)
A 		3.6
(-3)
A 		14.4
(3)
A 		11
B 20.6
(0.2)
A 		9.9
(-1.8)
A 		3.3
(-3)
A 		35.9
(3)
A 		33
C 26.6
(-2.7)
A 		25.7
(-3)
A 		43
(3)
M 		41.6
(2.5)
A 		17
avr 19.3
(-1.5) 		15.6
(-3) 		16.6
(-2.6) 		30.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 62.9
(3)
A 		16
(-1.7)
A 		23.1
(-1)
A 		3.2
(-3)
A 		45.4
(1.2)
A 		45
(1.2)
A 		60
B 10.2
(0.4)
A 		10.2
(0.4)
A 		2.9
(-3)
A 		5.7
(-1.7)
A 		15.8
(3)
A 		12.6
(1.5)
A 		13
C 14.6
(-0.8)
A 		15.2
(-0.7)
A 		34.2
(3)
A 		3.6
(-3)
A 		29.3
(2)
A 		12.1
(-1.3)
A 		31
avr 29.2
(2.8) 		13.8
(-0.8) 		20.1
(0.7) 		4.2
(-3) 		30.2
(3) 		23.2
(1.4) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.9
(3)
A 		2.4
(0)
A 		0.9
(-3)
A 		2.1
(-0.6)
A 		3
B 6.6
(2)
A 		2.4
(-1.6)
A 		0.8
(-3)
A 		7.7
(3)
A 		7
C 8.8
(-1.7)
A 		7.4
(-2.7)
A 		15
(3)
M 		7
(-3)
A 		8
avr 6.4
(3) 		4.1
(-3) 		5.6
(0.9) 		5.6
(0.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.6
(2)
A 		5.7
(-0.7)
A 		5
(-1)
A 		0.8
(-3)
A 		13.7
(3)
A 		11
(1.7)
A 		13
B 3.6
(0.1)
A 		3.4
(-0.2)
A 		0.7
(-3)
A 		1.5
(-2.2)
A 		6.4
(3)
A 		4.7
(1.2)
A 		6
C 5.4
(0.2)
A 		4.6
(-0.3)
A 		8.7
(2.5)
A 		0.7
(-3)
A 		9.5
(3)
A 		4
(-0.8)
A 		9
avr 6.9
(1) 		4.6
(-0.6) 		4.8
(-0.4) 		1
(-3) 		9.9
(3) 		6.6
(0.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7988
Sequence Type Exemplar sequence
Representative Public ID K02D10.2 NCBI
Target Description K02D10.2 /REP_DB=WormBase Gene ID /WP=CE00242 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066536 NCBI Caenorhabditis elegans K02D10.2 (K02D10.2) mRNA, complete cds. 11/11 None
SNAP00000017000 ENSEMBL cdna:SNAP chromosome:CEL140:III:8770658:8771907:-1 10/11 None
K02D10.2 ENSEMBL cdna:known chromosome:CEL140:III:8770658:8771127:-1 gene:K02D10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017007 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8770653-8771123(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02D10.2
Entrez Gene 186877 Entrez gene
SwissProt P34493 EMBL-EBI
WormBase CE00242 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28083 Hypothetical protein K02D10.2 [Caenorhabditis elegans] ref|NP_498937.1| K02D10.2 [Caenorhabditis elegans] sp|P34493|YMQ2_CAEEL Hypothetical protein K02D10.2 in chromosome III 6.0E-68
blast AAA28083 Hypothetical protein K02D10.2 [Caenorhabditis elegans] ref|NP_498937.1| K02D10.2 [Caenorhabditis elegans] sp|P34493|YMQ2_CAEEL Hypothetical protein K02D10.2 in chromosome III 4.0E-59
blast AAA28081 Hypothetical protein K02D10.3 [Caenorhabditis elegans] ref|NP_498938.1| K02D10.3 [Caenorhabditis elegans] sp|P34494|YMQ3_CAEEL Hypothetical protein K02D10.3 in chromosome III 9.0E-12
Sequence
Target Sequence 
>C. ELEGANS:176232_AT
aagctcaaaatcggttgcgaagcaaagaaaactaccgaccgagtggagaatagtggcaat
ggaaccggatcaattagtgctccgcttacggacttaggtccttcaattggtgattcacat
gagaacaagggggctgacattcccatccatccaccactcgatacacaatctcacgccaaa
gatgatgattggtacgacatcttagtcataacagctgactacgaatttccaaagaaccca
gcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTCAAAATCGGTTGCGAAGCAA 516 149 106 Antisense
GAAAACTACCGACCGAGTGGAGAAT 254 355 132 Antisense
GAATAGTGGCAATGGAACCGGATCA 180 315 153 Antisense
GAACCGGATCAATTAGTGCTCCGCT 241 347 167 Antisense
GTGCTCCGCTTACGGACTTAGGTCC 49 479 182 Antisense
CGGACTTAGGTCCTTCAATTGGTGA 324 239 194 Antisense
AACAAGGGGGCTGACATTCCCATCC 184 129 229 Antisense
CTCGATACACAATCTCACGCCAAAG 265 233 262 Antisense
GGTACGACATCTTAGTCATAACAGC 398 505 296 Antisense
CATAACAGCTGACTACGAATTTCCA 594 209 312 Antisense
TACGAATTTCCAAAGAACCCAGCAA 476 649 325 Antisense
Sequence Source Affymetrix Proprietary Database