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[176230_at]

Description Y71H2AM.G /REP_DB=WormBase Gene ID /WP=CE22949 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 76      4grp_high_8_8 > 22      6grp_total > 56      4grp_total > 16      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 146.1
(-3)
M 		209.3
(-2.3)
A 		364.5
(-0.7)
P 		724
(3)
P 		578
B 165.5
(-3)
P 		299.1
(-1.5)
P 		328.5
(-1.2)
P 		707.3
(3)
P 		542
C 142.1
(-3)
P 		239.5
(-2.2)
P 		337.9
(-1.3)
P 		831.6
(3)
P 		690
avr 151.2
(-3) 		249.3
(-2) 		343.6
(-1.1) 		754.3
(3) 		603

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 153.8
(-2.8)
A 		237.3
(-1)
P 		255.9
(-0.6)
P 		193.5
(-2)
P 		144.4
(-3)
P 		425.6
(3)
P 		281
B 152
(-2.5)
P 		235.5
(-0.2)
P 		181.4
(-1.7)
P 		132.2
(-3)
P 		157.2
(-2.3)
P 		355.9
(3)
P 		224
C 91.9
(-3)
A 		266.6
(0.5)
P 		182.8
(-1.2)
P 		163.4
(-1.5)
P 		125.4
(-2.3)
M 		387.3
(3)
P 		295
avr 132.6
(-3) 		246.5
(-0.3) 		206.7
(-1.3) 		163
(-2.3) 		142.3
(-2.8) 		389.6
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 53.2
(-2.2)
M 		45.4
(-3)
A 		95.3
(1.9)
P 		106
(3)
P 		61
B 52.8
(-3)
P 		73.9
(-1.7)
P 		76.1
(-1.6)
P 		150.7
(3)
P 		98
C 47.1
(-3)
P 		68.9
(-1.6)
P 		117.8
(1.6)
P 		140.2
(3)
P 		93
avr 51
(-3) 		62.7
(-2.1) 		96.4
(0.4) 		132.3
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 28.4
(-3)
A 		84.4
(1.5)
P 		55.7
(-0.8)
P 		49.1
(-1.3)
P 		43.6
(-1.8)
P 		103.6
(3)
P 		75
B 52.9
(-1.9)
P 		78.4
(-0.3)
P 		44.1
(-2.4)
P 		35
(-3)
P 		63.9
(-1.2)
P 		132.7
(3)
P 		98
C 34.1
(-2.9)
A 		81.3
(0)
P 		46.5
(-2.2)
P 		32.9
(-3)
P 		40.6
(-2.5)
M 		129.6
(3)
P 		97
avr 38.5
(-3) 		81.4
(0.1) 		48.8
(-2.3) 		39
(-3) 		49.4
(-2.2) 		122
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18960
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.G NCBI
Target Description Y71H2AM.G /REP_DB=WormBase Gene ID /WP=CE22949 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065211 NCBI Caenorhabditis elegans Y71H2AM.16 (Y71H2AM.16) mRNA, complete cds. 11/11 None
Y71H2AM.16 ENSEMBL cdna:known chromosome:CEL140:III:2757158:2760743:-1 gene:Y71H2AM.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014444 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014480 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2757157-2760743(-) 83.05 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2AM.16
Entrez Gene 190610 Entrez gene
SwissProt Q9BL40 EMBL-EBI
WormBase CE22949 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29966 Hypothetical protein Y71H2AM.16 [Caenorhabditis elegans] ref|NP_497612.1| Y71H2AM.16 [Caenorhabditis elegans] 0.0
blast CAE64979 Hypothetical protein CBG09814 [Caenorhabditis briggsae] 1.0E-133
blast CAE70792 Hypothetical protein CBG17548 [Caenorhabditis briggsae] 2.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:176230_AT
tgattccgtatacagctgctttgattgtggaattgcatagactaaatggaaaatcttttg
ttaaggttagtcttcaactggaagtagtgaaatctactgtgggcttaggcttaggcttaa
gttcagacttaggcttaggctttggcttaggcttaggattaggctctggacttagccaca
tgattggctgtggctcaggccaaggcttaggcataggcttaggcttaatcttaggcacag
gcttaggcttaggcttaaaattaggctttggacttagccacatgattggctttggctcag
gccaaggcttaggcttaggcttaggcttaggcttaggcttggacattctcaaccgcagct
ctccggaatctgctccccgcgagcttcgtcttcctggatgcgatgtgctttgcccaatgg
aaacctaccaggaatttgtttcaacacgaattatttccaacaaagaggagcatgacgtca
tctgtcagaactttgaagctccagaaatcgaacttccatcacaagaacttcccaagaacc
ttcccgaagaagatcacctcttctcaacacttatcactgtcggatctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTCCGTATACAGCTGCTTTGAT 514 561 818 Antisense
ATCTACTGTGGGCTTAGGCTTAGGC 586 31 909 Antisense
TAGGCTTAGGATTAGGCTCTGGACT 233 653 965 Antisense
GCTCTGGACTTAGCCACATGATTGG 659 297 980 Antisense
GTGGCTCAGGCCAAGGCTTAGGCAT 13 493 1007 Antisense
GGCTTAGGCTTAATCTTAGGCACAG 33 539 1033 Antisense
ATTGGCTTTGGCTCAGGCCAAGGCT 275 1 1102 Antisense
GTCTTCCTGGATGCGATGTGCTTTG 415 467 1205 Antisense
GTGCTTTGCCCAATGGAAACCTACC 431 467 1222 Antisense
GGAGCATGACGTCATCTGTCAGAAC 313 521 1284 Antisense
AACACTTATCACTGTCGGATCTCTT 496 133 1383 Antisense
Sequence Source Affymetrix Proprietary Database