[Home] | [Total List]

[176228_at]

Description Y47D7A.6 /REP_DB=WormBase Gene ID /WP=CE24349 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 51.4
(-2.6)
A 		64.2
(-1.7)
A 		44.9
(-3)
A 		136.7
(3)
A 		92
B 81.9
(1.2)
A 		97.7
(3)
A 		46.1
(-3)
A 		68.9
(-0.3)
A 		52
C 73.7
(0.5)
A 		94.5
(3)
A 		43.6
(-3)
A 		45.7
(-2.8)
A 		51
avr 69
(0.6) 		85.5
(3) 		44.9
(-3) 		83.8
(2.7) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 63.5
(1.7)
A 		25.5
(-2.6)
A 		21.5
(-3)
A 		49.7
(0.2)
A 		74.9
(3)
A 		40.4
(-0.9)
A 		53
B 95.7
(3)
A 		8.3
(-3)
A 		54.7
(0.2)
A 		65.1
(0.9)
A 		42.8
(-0.6)
A 		40.3
(-0.8)
A 		87
C 52.5
(-0.8)
A 		52.1
(-0.8)
A 		28.4
(-3)
A 		94.1
(3)
A 		70.1
(0.8)
A 		50.5
(-1)
A 		66
avr 70.6
(3) 		28.6
(-3) 		34.9
(-2.1) 		69.6
(2.9) 		62.6
(1.9) 		43.7
(-0.8) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.7
(2.1)
A 		13.9
(-1.4)
A 		11.7
(-3)
A 		20
(3)
A 		8
B 26.1
(3)
A 		24.1
(2.2)
A 		10.7
(-3)
A 		14.7
(-1.4)
A 		15
C 24.4
(2.1)
A 		27.2
(3)
A 		15.2
(-0.7)
A 		7.7
(-3)
A 		20
avr 23.1
(3) 		21.7
(2.2) 		12.5
(-3) 		14.1
(-2.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.7
(-0.7)
A 		9.1
(-1.5)
A 		4.7
(-3)
A 		12.6
(-0.4)
A 		22.6
(3)
A 		9.8
(-1.3)
A 		18
B 33.3
(3)
A 		2.8
(-3)
A 		13.3
(-0.9)
A 		17.2
(-0.2)
A 		17.4
(-0.1)
A 		15
(-0.6)
A 		31
C 19.5
(1.8)
A 		15.9
(0.4)
A 		7.2
(-3)
A 		18.9
(1.5)
A 		22.7
(3)
A 		16.9
(0.8)
A 		16
avr 21.5
(3) 		9.3
(-2.6) 		8.4
(-3) 		16.2
(0.6) 		20.9
(2.7) 		13.9
(-0.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14848
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.6 NCBI
Target Description Y47D7A.6 /REP_DB=WormBase Gene ID /WP=CE24349 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071816 NCBI Caenorhabditis elegans Y47D7A.6 (Y47D7A.6) mRNA, complete cds. 11/11 None
SNAP00000043258 ENSEMBL cdna:SNAP chromosome:CEL140:V:4415836:4416613:-1 11/11 None
GENEFINDER00000043286 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4415836:4418000:-1 11/11 None
Y47D7A.6 ENSEMBL cdna:known chromosome:CEL140:V:4415836:4418030:-1 gene:Y47D7A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4415835-4418030(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.6
Entrez Gene 189983 Entrez gene
SwissProt Q9N3V2 EMBL-EBI
WormBase CE24349 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60637 Hypothetical protein Y47D7A.6 [Caenorhabditis elegans] ref|NP_504217.1| Y47D7A.6 [Caenorhabditis elegans] 0.0
blast AAF60637 Hypothetical protein Y47D7A.6 [Caenorhabditis elegans] ref|NP_504217.1| Y47D7A.6 [Caenorhabditis elegans] 5.0E-65
blast AAF60632 Hypothetical protein Y47D7A.11 [Caenorhabditis elegans] ref|NP_504224.2| Y47D7A.11 [Caenorhabditis elegans] 7.0E-27
blast AAF60640 Hypothetical protein Y47D7A.2 [Caenorhabditis elegans] ref|NP_504219.1| Y47D7A.2 [Caenorhabditis elegans] 2.0E-26
blast AAF60632 Hypothetical protein Y47D7A.11 [Caenorhabditis elegans] ref|NP_504224.2| Y47D7A.11 [Caenorhabditis elegans] 4.0E-24
blast AAF60636 Hypothetical protein Y47D7A.7 [Caenorhabditis elegans] ref|NP_504218.1| Y47D7A.7 [Caenorhabditis elegans] 3.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043286 2 109-131,187-209
Sequence
Target Sequence 
>C. ELEGANS:176228_AT
gcctcccaacgattatgctcagaagcctgcttactcaactgcaccaccaacatacccaac
tgaagctccaacttacccaactacagcttcctacgaaacaactccttcttatccagaacc
aagctaccaagtttcaaagaagtacccaattgcaccaacatatgaaaccacaccatctta
tgaaacaactccatcatacctagttcaaagtcacgccgcaagtaagaagtacccaattgc
tccaacttacgagacaacaccatcatcctatgatacgactccatcttactctgttccaag
ctacaccgcaccgaagaaatatccagtggcttccccaccatctgactatgcccagaagcc
atcttactcagcaccatccccatccggatatacttctaacttcgaggcacccactgagac
gaattatgctccagcacctgcttcgtattcggcaacagctatggattacacttcaaactc
tgctggatcttatcgtcaacgtgcaaaggctcgcaccgcccataaccgtcatttccaacg
tcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCCCAACGATTATGCTCAGAAG 681 281 762 Antisense
ACGAAACAACTCCTTCTTATCCAGA 64 93 854 Antisense
ATACCTAGTTCAAAGTCACGCCGCA 32 23 957 Antisense
GAAGTACCCAATTGCTCCAACTTAC 411 335 987 Antisense
TATGATACGACTCCATCTTACTCTG 687 655 1030 Antisense
TGCCCAGAAGCCATCTTACTCAGCA 325 585 1110 Antisense
TATACTTCTAACTTCGAGGCACCCA 290 661 1150 Antisense
CACCTGCTTCGTATTCGGCAACAGC 668 201 1196 Antisense
AACTCTGCTGGATCTTATCGTCAAC 511 141 1237 Antisense
GTCAACGTGCAAAGGCTCGCACCGC 212 465 1256 Antisense
CATAACCGTCATTTCCAACGTCGTG 231 211 1282 Antisense
Sequence Source Affymetrix Proprietary Database