[Home] | [Total List]

[176226_at]

Description K08D12.2 /REP_DB=WormBase Gene ID /WP=CE25942 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2
(-3)
A 		2.5
(-2.5)
A 		2
(-3)
A 		7.5
(3)
A 		6
B 2.5
(-3)
A 		5.9
(3)
A 		3.9
(-0.5)
A 		3.4
(-1.4)
A 		3
C 4.7
(-0.3)
A 		8.6
(3)
A 		1.4
(-3)
A 		4.1
(-0.8)
A 		7
avr 3.1
(-1.7) 		5.7
(3) 		2.4
(-3) 		5
(1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2.3
(1.5)
A 		2
(-0.8)
A 		2.5
(3)
A 		1.9
(-1.5)
A 		1.7
(-3)
A 		2.2
(0.8)
A 		1
B 1.6
(-0.3)
A 		1.5
(-1)
A 		2.1
(3)
A 		1.7
(0.3)
A 		1.2
(-3)
A 		1.4
(-1.7)
A 		1
C 1.7
(-1.3)
A 		1.6
(-1.7)
A 		2.6
(2.6)
A 		2.7
(3)
A 		1.3
(-3)
A 		1.6
(-1.7)
A 		1
avr 1.9
(0) 		1.7
(-1.2) 		2.4
(3) 		2.1
(1.2) 		1.4
(-3) 		1.7
(-1.2) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(-1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.1
(3)
A 		1
B 0.8
(-2.1)
A 		1.4
(3)
A 		0.9
(-1.3)
A 		0.7
(-3)
A 		1
C 1.6
(0.3)
A 		2.5
(3)
A 		0.5
(-3)
A 		0.7
(-2.4)
A 		2
avr 1
(-0.3) 		1.5
(3) 		0.6
(-3) 		0.8
(-1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 0
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.7
(3)
A 		0.5
(-1)
A 		0.5
(-1)
A 		0.5
(-1)
A 		0.5
(-1)
A 		0
B 0.6
(3)
A 		0.5
(0)
A 		0.5
(0)
A 		0.4
(-3)
A 		0.5
(0)
A 		0.5
(0)
A 		0
C 0.6
(1)
A 		0.5
(-1)
A 		0.7
(3)
A 		0.5
(-1)
A 		0.4
(-3)
A 		0.5
(-1)
A 		0
avr 0.5
(-3) 		0.6
(3) 		0.6
(3) 		0.5
(-3) 		0.5
(-3) 		0.5
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10718
Sequence Type Exemplar sequence
Representative Public ID K08D12.2 NCBI
Target Description K08D12.2 /REP_DB=WormBase Gene ID /WP=CE25942 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067726 NCBI Caenorhabditis elegans K08D12.2 (K08D12.2) mRNA, complete cds. 11/11 None
SNAP00000039172 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1711277:1714177:1 11/11 None
GENEFINDER00000039176 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1711277:1714177:1 11/11 None
K08D12.2 ENSEMBL cdna:known chromosome:CEL140:IV:1711277:1714177:1 gene:K08D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1711282-1714183(+) 91.94 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D12.2
Entrez Gene 187156 Entrez gene
SwissProt Q966I6 EMBL-EBI
WormBase CE32468 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20733.1.S1_S_AT similar to XRP2 protein cfa
CANINE_2:CFAAFFX.22793.1.S1_AT similar to XRP2 protein cfa
CHICKEN:GGA.17621.1.S1_S_AT retinitis pigmentosa 2 (X-linked recessive) gga
HG-U133_PLUS_2:205191_AT retinitis pigmentosa 2 (X-linked recessive) hs
HG-U133A:205191_AT retinitis pigmentosa 2 (X-linked recessive) hs
HG-FOCUS:205191_AT retinitis pigmentosa 2 (X-linked recessive) hs
HG-U133A_2:205191_AT retinitis pigmentosa 2 (X-linked recessive) hs
HU35KSUBC:RC_N70013_AT retinitis pigmentosa 2 (X-linked recessive) hs
U133_X3P:G5902059_3P_AT retinitis pigmentosa 2 (X-linked recessive) hs
U133_X3P:HS2.391892.1.S1_3P_AT retinitis pigmentosa 2 (X-linked recessive) hs
HG-U133_PLUS_2:1568782_AT retinitis pigmentosa 2 (X-linked recessive) hs
HG-U95AV2:39964_AT retinitis pigmentosa 2 (X-linked recessive) hs
MOUSE430_2:1419586_AT retinitis pigmentosa 2 homolog (human) mm
MOE430A:1419586_AT retinitis pigmentosa 2 homolog (human) mm
MOUSE430A_2:1419586_AT retinitis pigmentosa 2 homolog (human) mm
MOUSE430_2:1419587_S_AT retinitis pigmentosa 2 homolog (human) mm
MOE430A:1419587_S_AT retinitis pigmentosa 2 homolog (human) mm
MOUSE430A_2:1419587_S_AT retinitis pigmentosa 2 homolog (human) mm
MOUSE430_2:1419585_AT retinitis pigmentosa 2 homolog (human) mm
MOE430A:1419585_AT retinitis pigmentosa 2 homolog (human) mm
MOUSE430A_2:1419585_AT retinitis pigmentosa 2 homolog (human) mm
MG-U74BV2:114086_AT retinitis pigmentosa 2 homolog (human) mm
MG-U74BV2:111206_AT retinitis pigmentosa 2 homolog (human) mm
MOE430B:1434061_AT retinitis pigmentosa 2 homolog (human) mm
MOUSE430_2:1434061_AT retinitis pigmentosa 2 homolog (human) mm
MOE430B:1454816_AT retinitis pigmentosa 2 homolog (human) mm
MOUSE430_2:1454816_AT retinitis pigmentosa 2 homolog (human) mm
MU19KSUBC:TC41326_AT Retinitis pigmentosa 2 homolog (human) (Rp2h), mRNA mm
MU19KSUBC:TC41326_G_AT Retinitis pigmentosa 2 homolog (human) (Rp2h), mRNA mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84541 Hypothetical protein K08D12.2 [Caenorhabditis elegans] ref|NP_500127.2| K08D12.2 [Caenorhabditis elegans] 1.0E-178
blast AAK84541 Hypothetical protein K08D12.2 [Caenorhabditis elegans] ref|NP_500127.2| K08D12.2 [Caenorhabditis elegans] 1.0E-173
blast CAE67982 Hypothetical protein CBG13588 [Caenorhabditis briggsae] 1.0E-110
blast CAE67982 Hypothetical protein CBG13588 [Caenorhabditis briggsae] 1.0E-108
blast XP_346267 PREDICTED: similar to mouse Rp2 protein [Rattus norvegicus] 1.0E-32
Sequence
Target Sequence 
>C. ELEGANS:176226_AT
ataagcattctgtgcccaactgagccaattgtggagaactcaagcgacattcacttcttc
catttggcaatgcggtacccggagcttaaagaccaaatgcacgctgtcggactacgtcca
ttcacaaatcgaatcgcgtcggtgcacgacttcactccggccggggtcaatggaaaaggc
aactttcgagtcacgccagaagtcgttcaaatttccgacggccaagaggagattcttcgg
gccaagggcgtaatcctcaagccgtctccggcggactttatcccacgattcaccgacacc
actgacccggatccgacgttcctgtacgtgctcggcaaatcagagcctgttgatgagctc
ggtgatcgcgcgatcgaacttcttcacgcgatctacaagtcggggatgcaggtcatgggc
acttgcgatctcgagacaagcaccgtcgactcgaagttggtcccgtttgccgggcaagca
gagcgtatgatcctgttccaactgaaagggaacctcgccaacctcgagtgtgacgtggaa
tttgacgtgatgtccgagaacgacctggttccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAGCATTCTGTGCCCAACTGAGC 605 23 511 Antisense
AACTCAAGCGACATTCACTTCTTCC 667 139 547 Antisense
TGGCAATGCGGTACCCGGAGCTTAA 581 545 575 Antisense
CAAATGCACGCTGTCGGACTACGTC 625 191 604 Antisense
TTCACTCCGGCCGGGGTCAATGGAA 570 589 661 Antisense
TTGATGAGCTCGGTGATCGCGCGAT 515 705 860 Antisense
TCGCGCGATCGAACTTCTTCACGCG 584 599 876 Antisense
TCATGGGCACTTGCGATCTCGAGAC 420 623 923 Antisense
AGACAAGCACCGTCGACTCGAAGTT 443 71 944 Antisense
GCAGAGCGTATGATCCTGTTCCAAC 302 313 988 Antisense
ATGTCCGAGAACGACCTGGTTCCAC 188 47 1060 Antisense
Sequence Source Affymetrix Proprietary Database