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[176221_at]

Description Y69A2AR.H /REP_DB=WormBase Gene ID /WP=CE22807 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 66      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.5
(-3)
A 		1.8
(-2.9)
A 		7.1
(-1.4)
A 		22.2
(3)
A 		21
B 1.1
(-3)
A 		17.3
(3)
A 		2.3
(-2.6)
A 		2.1
(-2.6)
A 		16
C 1
(-3)
A 		1.3
(-2.8)
A 		9.2
(3)
A 		6.8
(1.2)
A 		8
avr 1.2
(-3) 		6.8
(0.7) 		6.2
(0.3) 		10.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.8
(-2.2)
A 		1.5
(-3)
A 		4
(-2.1)
A 		5.1
(-1.7)
A 		2.2
(-2.7)
A 		18.1
(3)
A 		17
B 1.4
(-2.7)
A 		1.9
(-1.4)
A 		1.3
(-3)
A 		2.3
(-0.3)
A 		1.9
(-1.4)
A 		3.5
(3)
A 		2
C 2.2
(-0.6)
A 		1.1
(-3)
A 		3.8
(3)
A 		2.1
(-0.8)
A 		1.1
(-3)
A 		1.9
(-1.2)
A 		3
avr 2.5
(-2) 		1.5
(-3) 		3
(-1.6) 		3.2
(-1.4) 		1.7
(-2.8) 		7.8
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.6
(-2.6)
A 		0.4
(-3)
A 		1.8
(-0)
A 		3.2
(3)
A 		3
B 0.4
(-3)
A 		4.3
(3)
A 		0.5
(-2.8)
A 		0.5
(-2.8)
A 		4
C 0.3
(-3)
A 		0.4
(-2.8)
A 		3.2
(3)
A 		1.1
(-1.3)
A 		3
avr 0.4
(-3) 		1.7
(2.6) 		1.8
(3) 		1.6
(2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		0.5
(-3)
A 		0.9
(-2.4)
A 		1.3
(-1.8)
A 		0.6
(-2.8)
A 		4.4
(3)
A 		4
B 0.5
(-1.8)
A 		0.6
(-1.2)
A 		0.3
(-3)
A 		0.6
(-1.2)
A 		0.8
(0)
A 		1.3
(3)
A 		1
C 0.8
(1.3)
A 		0.3
(-3)
A 		1
(3)
A 		0.4
(-2.1)
A 		0.3
(-3)
A 		0.6
(-0.4)
A 		1
avr 0.7
(-2.3) 		0.5
(-3) 		0.7
(-2.3) 		0.8
(-1.9) 		0.6
(-2.6) 		2.1
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176221_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19227
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.H NCBI
Target Description Y69A2AR.H /REP_DB=WormBase Gene ID /WP=CE22807 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000018811 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2576017:2576319:-1 11/11 None
GENEFINDER00000018847 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2576017:2576319:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2576022-2576325(-) 16.17 100.0
Sequence
Target Sequence 
>C. ELEGANS:176221_AT
ggttcaaccgatcgattatttggaacaaaaaggacgtggttctgatggtcgatgcgaaat
tcgagagagaagacaattggttcggatctcaaacagttgcatggctccgaacgcaaggat
tttagtgtcaaatccaacgaatgacgaagaagacgctgcagaggacgaagaagaaggccc
agacaacgtcgtcagccagtcgatcgtggaggagaagctggcggttcgaagagactccgg
agaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCAACCGATCGATTATTTGGAA 127 507 15 Antisense
GGACGTGGTTCTGATGGTCGATGCG 88 525 46 Antisense
AAGACAATTGGTTCGGATCTCAAAC 518 151 84 Antisense
GATCTCAAACAGTTGCATGGCTCCG 595 419 99 Antisense
GCATGGCTCCGAACGCAAGGATTTT 406 311 113 Antisense
ATTTTAGTGTCAAATCCAACGAATG 119 13 133 Antisense
GACGAAGAAGACGCTGCAGAGGACG 699 377 157 Antisense
GAAGAAGGCCCAGACAACGTCGTCA 146 337 184 Antisense
TCGTCAGCCAGTCGATCGTGGAGGA 215 603 203 Antisense
CGTGGAGGAGAAGCTGGCGGTTCGA 609 241 219 Antisense
GGCGGTTCGAAGAGACTCCGGAGAA 362 541 234 Antisense
Sequence Source Affymetrix Proprietary Database