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[176219_s_at]

Description Y69A2AR.N /REP_DB=WormBase Gene ID /WP=CE26564 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 76      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 129.9
(-3)
A 		320.4
(3)
A 		187.8
(-1.2)
A 		243.2
(0.6)
A 		191
B 172.1
(-3)
P 		244.6
(3)
A 		216.4
(0.7)
A 		195.5
(-1.1)
M 		73
C 145.1
(-3)
A 		189
(-0.8)
A 		228.2
(1.2)
M 		264.9
(3)
P 		120
avr 149
(-3) 		251.3
(3) 		210.8
(0.6) 		234.5
(2) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 143.9
(-3)
A 		186.9
(-0.6)
A 		230.4
(1.8)
A 		192.3
(-0.3)
A 		199.8
(0.1)
A 		251.2
(3)
P 		107
B 185.5
(-1.2)
A 		134.6
(-3)
M 		290.7
(2.5)
A 		180.2
(-1.4)
P 		171.9
(-1.7)
P 		306.1
(3)
P 		172
C 113.3
(-3)
A 		173.3
(-1.8)
A 		171.1
(-1.8)
A 		252.1
(-0.2)
P 		172.5
(-1.8)
M 		414
(3)
P 		301
avr 147.6
(-3) 		164.9
(-2.4) 		230.7
(-0.2) 		208.2
(-0.9) 		181.4
(-1.8) 		323.8
(3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 47.3
(-0.9)
A 		69.6
(3)
A 		49.1
(-0.6)
A 		35.6
(-3)
A 		34
B 54.9
(1.2)
P 		60.4
(3)
A 		50.2
(-0.3)
A 		41.7
(-3)
M 		19
C 48
(-2.4)
A 		54.4
(-1.3)
A 		79.5
(3)
M 		44.7
(-3)
P 		35
avr 50.1
(-0.3) 		61.5
(3) 		59.6
(2.5) 		40.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 26.5
(-3)
A 		66.5
(3)
A 		50.2
(0.6)
A 		48.8
(0.3)
A 		60.3
(2.1)
A 		61.2
(2.2)
P 		40
B 64.5
(-1.3)
A 		44.8
(-3)
M 		70.6
(-0.8)
A 		47.7
(-2.7)
P 		69.8
(-0.8)
P 		114.1
(3)
P 		69
C 42
(-3)
A 		52.9
(-2.3)
A 		43.5
(-2.9)
A 		50.7
(-2.5)
P 		55.8
(-2.1)
M 		138.6
(3)
P 		97
avr 44.3
(-3) 		54.7
(-2) 		54.8
(-2) 		49.1
(-2.5) 		62
(-1.2) 		104.6
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176219_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19222
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.N NCBI
Target Description Y69A2AR.N /REP_DB=WormBase Gene ID /WP=CE26564 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067811
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000018803 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2494550:2494723:-1 None
Y69A2AR.21 ENSEMBL cdna:known chromosome:CEL140:IV:2494547:2495172:-1 gene:Y69A2AR.21 None
GENEFINDER00000018848 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2494550:2495165:-1 None
NM_067811 NCBI Caenorhabditis elegans Y69A2AR.21 (Y69A2AR.21) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2494555-2500178(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.21
Entrez Gene 177037 Entrez gene
SwissProt Q95XJ1 EMBL-EBI
WormBase CE27517 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68566 Hypothetical protein Y69A2AR.21 [Caenorhabditis elegans] ref|NP_500212.1| Y69A2AR.21 [Caenorhabditis elegans] 9.0E-78
blast CAE74689 Hypothetical protein CBG22501 [Caenorhabditis briggsae] 8.0E-72
blast AAK68566 Hypothetical protein Y69A2AR.21 [Caenorhabditis elegans] ref|NP_500212.1| Y69A2AR.21 [Caenorhabditis elegans] 4.0E-19
blast CAE74689 Hypothetical protein CBG22501 [Caenorhabditis briggsae] 9.0E-19
blast AAH26668 Coiled-coil domain containing 12 [Mus musculus] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:176219_S_AT
caccgcaaagtcctctgtcggaggtaatgagcaccaaaacttgcttcttggactcttgct
tctcgactccctcgacaactggatcgatgttgtcgaagaaggtcttggctccgactccat
gaccgacaaaaacaacagcgattccgatgaagacatcgaaagtctcacaaatcatgaaac
gtcgttagaggctgcggcgaaagcacgcaaacgacgattactagcgatgaagtcgaagat
tcatggaattgagatgcaagaggaggattacgacgaaggcgagacttctaccaagaaaag
tcgcgaagttggtcgagaattccggaatcacaagccagacgatgccgtcggcacgcaaaa
cgtcgacatggatctggatatcgttcagcgagaaattacggagcatttgaaggacgttct
gcacgaaaaagccatcgacagcgtagatctggcgatgttggctccgaagaagatcgattg
ggatttgaagcgagacatcgagtcgaaattgcaaaaattggagcggagaacgcagaaagc
cgtggcgacgatcatcagacagcggctcgccgaaggaaaaggagatctcgccgctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGCAAAGTCCTCTGTCGGAGGT 94 201 912 Antisense
AAAACTTGCTTCTTGGACTCTTGCT 258 131 947 Antisense
ACTCCCTCGACAACTGGATCGATGT 519 99 977 Antisense
TCGAAGAAGGTCTTGGCTCCGACTC 668 599 1004 Antisense
GAAACGTCGTTAGAGGCTGCGGCGA 438 351 1087 Antisense
AGTTGGTCGAGAATTCCGGAATCAC 483 61 1218 Antisense
TCACAAGCCAGACGATGCCGTCGGC 705 627 1239 Antisense
TGCCGTCGGCACGCAAAACGTCGAC 205 305 1254 Antisense
CGTAGATCTGGCGATGTTGGCTCCG 514 247 1353 Antisense
AAAGCCGTGGCGACGATCATCAGAC 469 125 1447 Antisense
AGGAAAAGGAGATCTCGCCGCTACA 233 55 1485 Antisense
Sequence Source Affymetrix Proprietary Database