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[176218_at]

Description Y82E9BL.L /REP_DB=WormBase Gene ID /WP=CE23357 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 04      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 75.1
(2.9)
A 		12.8
(-3)
A 		44.9
(0)
A 		76.3
(3)
A 		64
B 19.8
(-3)
A 		23.5
(-2.6)
A 		42.1
(-0.6)
A 		74.9
(3)
A 		55
C 67.2
(-2)
A 		123.7
(2)
A 		53.7
(-3)
A 		137.6
(3)
A 		84
avr 54
(-2.1) 		53.3
(-2.2) 		46.9
(-3) 		96.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 142.8
(3)
A 		48.3
(-1.5)
A 		59.9
(-1)
A 		64.5
(-0.8)
A 		83.1
(0.1)
A 		17.8
(-3)
A 		125
B 68.7
(3)
A 		17.9
(-2.7)
A 		15.2
(-3)
A 		66.9
(2.8)
A 		27
(-1.7)
A 		59.1
(1.9)
A 		54
C 87.9
(0.9)
A 		128.4
(3)
A 		111.4
(2.1)
A 		61.1
(-0.5)
A 		63.8
(-0.3)
A 		11.6
(-3)
A 		117
avr 99.8
(3) 		64.9
(0) 		62.2
(-0.2) 		64.2
(-0) 		58
(-0.6) 		29.5
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 27.4
(3)
A 		2.8
(-3)
A 		11.7
(-0.8)
A 		11.2
(-1)
A 		25
B 6.3
(-2.7)
A 		5.8
(-3)
A 		9.8
(-0.6)
A 		16
(3)
A 		10
C 22.2
(-1.8)
A 		35.6
(3)
A 		18.7
(-3)
A 		23.2
(-1.4)
A 		17
avr 18.6
(3) 		14.7
(-1.5) 		13.4
(-3) 		16.8
(0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 26.3
(3)
A 		17.2
(0.5)
A 		13
(-0.6)
A 		16.4
(0.3)
A 		25.1
(2.7)
A 		4.3
(-3)
A 		22
B 23.9
(3)
A 		5.9
(-2.3)
A 		3.7
(-3)
A 		17.7
(1.2)
A 		11
(-0.8)
A 		22
(2.4)
A 		20
C 32.6
(1.9)
A 		39.2
(3)
A 		28.3
(1.1)
A 		12.3
(-1.6)
A 		20.6
(-0.2)
A 		3.9
(-3)
A 		35
avr 27.6
(3) 		20.8
(0.7) 		15
(-1.3) 		15.5
(-1.1) 		18.9
(0) 		10.1
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176218_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19033
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.L NCBI
Target Description Y82E9BL.L /REP_DB=WormBase Gene ID /WP=CE23357 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064978 NCBI Caenorhabditis elegans Y82E9BL.12 (Y82E9BL.12) mRNA, complete cds. 11/11 None
SNAP00000041765 ENSEMBL cdna:SNAP chromosome:CEL140:III:1308951:1321154:1 11/11 None
GENEFINDER00000041788 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1309231:1311200:1 11/11 None
Y82E9BL.12 ENSEMBL cdna:known chromosome:CEL140:III:1309177:1311200:1 gene:Y82E9BL.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1309230-1310300(+) 96.1 100.0
Public Domain and Genome References
Gene Title
Ensembl Y82E9BL.12
Entrez Gene 190759 Entrez gene
SwissProt Q95XC1 EMBL-EBI
WormBase CE27540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66036 Hypothetical protein Y82E9BL.12 [Caenorhabditis elegans] ref|NP_497379.1| Y82E9BL.12 [Caenorhabditis elegans] 0.0
blast AAK66036 Hypothetical protein Y82E9BL.12 [Caenorhabditis elegans] ref|NP_497379.1| Y82E9BL.12 [Caenorhabditis elegans] 1.0E-163
blast NP_503794 C31B8.12 [Caenorhabditis elegans] gb|AAG23971.2| Hypothetical protein C31B8.12 [Caenorhabditis elegans] 1.0E-159
blast NP_503794 C31B8.12 [Caenorhabditis elegans] gb|AAG23971.2| Hypothetical protein C31B8.12 [Caenorhabditis elegans] 1.0E-158
blast NP_503794 C31B8.12 [Caenorhabditis elegans] gb|AAG23971.2| Hypothetical protein C31B8.12 [Caenorhabditis elegans] 1.0E-143
blast CAE66163 Hypothetical protein CBG11400 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-38
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.6E-48
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.6E-40
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.6E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000041765 1 13-32
Sequence
Target Sequence 
>C. ELEGANS:176218_AT
aagcgatcagatcccgtggagcttccgaaaactgagaaaaaagaattgacaactgattgg
gacactttggatggagttgggtacagatttgcaaaggataaggaaatcgtaatggatccc
cgatttgaagaactggaaaaactgccaacttgtgacctgacagttgacaagacctctcaa
aaaattgacattccaaagctgatggactcatttcaagactgtatcaggcctattgtaaat
gaatggaaaaatgatttgaaagcgaaagaggagaacataatggtaacgctgggtattggt
catgacactatggcggaagaaaaactgaacagaactctccccaacacgaaattcttcgga
gccgacccgataattgagccgaaccgccaactttacacagctttcggaaaatacttcccg
tttgcaattggcaagaagcctggtttcacgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGATCAGATCCCGTGGAGCTTC 612 147 22 Antisense
TCGTAATGGATCCCCGATTTGAAGA 635 601 128 Antisense
AAAACTGCCAACTTGTGACCTGACA 369 131 159 Antisense
GACCTGACAGTTGACAAGACCTCTC 273 383 175 Antisense
AGACTGTATCAGGCCTATTGTAAAT 548 71 237 Antisense
GAAAAACTGAACAGAACTCTCCCCA 602 353 340 Antisense
CTCTCCCCAACACGAAATTCTTCGG 548 231 356 Antisense
AATTCTTCGGAGCCGACCCGATAAT 703 171 371 Antisense
TAATTGAGCCGAACCGCCAACTTTA 335 631 392 Antisense
AATACTTCCCGTTTGCAATTGGCAA 212 173 431 Antisense
GGCAAGAAGCCTGGTTTCACGAAAT 336 535 451 Antisense
Sequence Source Affymetrix Proprietary Database