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[176213_at]

Description Y119D3B.P /REP_DB=WormBase Gene ID /WP=CE26489 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 66      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 31.7
(1.2)
A 		41.2
(3)
A 		9.5
(-3)
A 		34.9
(1.8)
A 		32
B 16.4
(-1.9)
A 		63.8
(3)
A 		18.1
(-1.7)
A 		5.3
(-3)
A 		59
C 28.9
(0.4)
A 		48.1
(3)
A 		43.1
(2.3)
A 		4.3
(-3)
A 		44
avr 25.7
(-1.2) 		51
(3) 		23.6
(-1.5) 		14.8
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 14.9
(-2.4)
A 		15.6
(-2.3)
A 		45.9
(0.3)
A 		24.4
(-1.5)
A 		7.6
(-3)
A 		76.6
(3)
A 		69
B 21
(-2.8)
A 		18
(-3)
A 		57.8
(-0.3)
A 		23.9
(-2.6)
A 		36.5
(-1.7)
A 		104.9
(3)
P 		87
C 31.5
(-1.4)
A 		36.6
(-1)
A 		46.7
(-0.3)
A 		9.7
(-3)
A 		23.2
(-2)
A 		91.5
(3)
A 		82
avr 22.5
(-2.7) 		23.4
(-2.7) 		50.1
(-0.4) 		19.3
(-3) 		22.4
(-2.7) 		91
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.5
(3)
A 		8.9
(1.3)
A 		2.5
(-3)
A 		5.1
(-1.3)
A 		9
B 5.2
(-1.3)
A 		15.7
(3)
A 		4.2
(-1.7)
A 		1.1
(-3)
A 		15
C 9.6
(0.7)
A 		13.8
(2.5)
A 		15
(3)
A 		0.7
(-3)
A 		14
avr 8.8
(0.7) 		12.8
(3) 		7.2
(-0.2) 		2.3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.8
(-2.8)
A 		5.6
(-1.8)
A 		10
(-0.2)
A 		6.2
(-1.6)
A 		2.3
(-3)
A 		18.6
(3)
A 		16
B 7.3
(-2.8)
A 		6
(-3)
A 		14
(-1.5)
A 		6.3
(-2.9)
A 		14.8
(-1.4)
A 		39.1
(3)
P 		33
C 11.7
(-1)
A 		11.2
(-1.1)
A 		11.9
(-0.9)
A 		1.9
(-3)
A 		7.5
(-1.8)
A 		30.6
(3)
A 		29
avr 7.3
(-2.4) 		7.6
(-2.3) 		12
(-1.2) 		4.8
(-3) 		8.2
(-2.2) 		29.4
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19030
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.P NCBI
Target Description Y119D3B.P /REP_DB=WormBase Gene ID /WP=CE26489 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064948
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002033 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1208130:1213589:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064948 8/11 Cross Hyb Matching Probes None
Y119D3B.11 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1208129-1213589(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29718 Hypothetical protein Y119D3B.11 [Caenorhabditis elegans] ref|NP_497349.2| Y119D3B.11 [Caenorhabditis elegans] 0.0
blast CAE69122 Hypothetical protein CBG15148 [Caenorhabditis briggsae] 1.0E-140
Sequence
Target Sequence 
>C. ELEGANS:176213_AT
agcgaatccaactggtggccgaacttttcaagtttgcaaaagttcggccatcaatgaaaa
ttcattaaacactgaaattttcaccaattttcaagaaaaaacaagcaatttcccaggtgg
cctaacttttcaagttcgcaaaagttcggccaccttggaaaatcaacgaaaatcgatgaa
aaacagtaattttatccggtggccgaacttttcccaggatgaaaaaaatctcttcgagac
cacccttcaaccgtacccctccacgtggcgtaacgtcatcggcgccaatttctggatcga
tgacgtcacgaagacgtcactggacgcgtccgacgagtacgatatcgaaaatgcgatgct
caacgcgaaaaaattcgaaaaaatgccaatttccgtcgcgtggaggtgcctgctgacgca
tcgcaacttcaaatccgtaccgatggccgagtgggcggagctttttctcagaaatgtaca
acaaatgagccgaaaatcagcgaaaggcgcgtttttcgccgccgccggccaactcgagca
cattgggctcattcgtggagccgtcgacaaaaagtcgacaaatgttcacgttctgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGAATCCAACTGGTGGCCGAACT 191 77 1377 Antisense
AAGCAATTTCCCAGGTGGCCTAACT 105 137 1479 Antisense
TGGCCGAACTTTTCCCAGGATGAAA 598 541 1576 Antisense
TCCACGTGGCGTAACGTCATCGGCG 687 585 1636 Antisense
TCATCGGCGCCAATTTCTGGATCGA 212 621 1652 Antisense
CGAAGACGTCACTGGACGCGTCCGA 537 251 1685 Antisense
GACGCGTCCGACGAGTACGATATCG 285 381 1699 Antisense
CGCATCGCAACTTCAAATCCGTACC 310 255 1793 Antisense
GTACCGATGGCCGAGTGGGCGGAGC 135 457 1813 Antisense
GCTCATTCGTGGAGCCGTCGACAAA 122 301 1923 Antisense
GTCGACAAATGTTCACGTTCTGTAC 50 475 1950 Antisense
Sequence Source Affymetrix Proprietary Database