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[176212_at]

Description Y119D3B.B /REP_DB=WormBase Gene ID /WP=CE15008 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      6grp_highest_nonorm > 72      6grp_total > 61      4grp_total > 53      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 155.1
(3)
P 		123.4
(1.3)
P 		72.4
(-1.4)
P 		42.9
(-3)
A 		112
B 141.2
(3)
P 		93.5
(0.6)
P 		75.3
(-0.3)
P 		21.7
(-3)
A 		120
C 147.3
(3)
P 		92.1
(-1.6)
P 		106
(-0.4)
P 		75.1
(-3)
A 		72
avr 147.9
(3) 		103
(0.3) 		84.6
(-0.7) 		46.6
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 765
1 2 3 4 5 6 range
A 146.1
(-2.2)
P 		382.5
(-0.1)
P 		560.5
(1.6)
P 		718.6
(3)
P 		279.3
(-1)
P 		63.8
(-3)
P 		655
B 171
(-2.3)
P 		438.4
(-0.1)
P 		829.2
(3)
P 		533.1
(0.6)
P 		297.7
(-1.3)
P 		81.8
(-3)
P 		747
C 128.4
(-2.6)
P 		385
(0.1)
P 		522.5
(1.5)
P 		662.6
(3)
P 		311.4
(-0.7)
P 		91.6
(-3)
P 		571
avr 148.5
(-2.3) 		402
(0.5) 		637.4
(3) 		638.1
(3) 		296.1
(-0.7) 		79.1
(-3) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 56.5
(3)
P 		26.8
(-0.5)
P 		18.9
(-1.5)
P 		6.3
(-3)
A 		50
B 45
(3)
P 		23.1
(-0.3)
P 		17.5
(-1.1)
P 		4.6
(-3)
A 		40
C 48.8
(3)
P 		26.5
(-0.7)
P 		37
(1)
P 		12.7
(-3)
A 		36
avr 50.1
(3) 		25.5
(-0.5) 		24.5
(-0.6) 		7.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 26.9
(-2.6)
P 		136
(1.3)
P 		122.1
(0.8)
P 		182.3
(3)
P 		84.3
(-0.5)
P 		15.5
(-3)
P 		167
B 59.5
(-2)
P 		145.9
(1.1)
P 		201.3
(3)
P 		141.2
(0.9)
P 		121
(0.2)
P 		30.5
(-3)
P 		171
C 47.6
(-2)
P 		117.5
(2.1)
P 		133
(3)
P 		133.3
(3)
P 		100.8
(1.1)
P 		30.6
(-3)
P 		103
avr 44.7
(-2.1) 		133.1
(2.1) 		152.1
(3) 		152.3
(3) 		102
(0.6) 		25.5
(-3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18980
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.B NCBI
Target Description Y119D3B.B /REP_DB=WormBase Gene ID /WP=CE15008 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064957(11), NM_064961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064957 NCBI Caenorhabditis elegans Y119D3B.19 (Y119D3B.19) mRNA, complete cds. 11/11 None
NM_064961 NCBI Caenorhabditis elegans ZC47.7 (ZC47.7) mRNA, complete cds. 11/11 None
Y119D3B.19 ENSEMBL cdna:known chromosome:CEL140:III:1257203:1258404:-1 gene:Y119D3B.19 11/11 None
ZC47.7 ENSEMBL cdna:known chromosome:CEL140:III:1265663:1266845:-1 gene:ZC47.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002024 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002041 8/11 Cross Hyb Matching Probes None
GENEFINDER00000031992 8/11 Cross Hyb Matching Probes None
SNAP00000031981 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1257221-1258404(-) 100.0 100.0
chrIII:1265662-1266845(-) 99.88 99.88
Public Domain and Genome References
Gene Title

Ensembl Y119D3B.19
ZC47.7
Entrez Gene 191046 Entrez gene
191061 Entrez gene
SwissProt P92151 EMBL-EBI
WormBase CE15008 Wormbase
CE15008 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03495 Hypothetical protein ZC47.7 [Caenorhabditis elegans] gb|AAK39598.1| Hypothetical protein Y119D3B.19 [Caenorhabditis elegans] ref|NP_497362.1| ZC47.7 [Caenorhabditis elegans] ref|NP_497358.1| Y119D3B.19 [Caenorhabditis elegans] 1.0E-161
blast AAG37978 Hypothetical protein Y82E9BL.13 [Caenorhabditis elegans] ref|NP_497378.1| Y82E9BL.13 [Caenorhabditis elegans] 4.0E-60
blast AAK68889 Hypothetical protein Y54F10BM.10 [Caenorhabditis elegans] ref|NP_497534.1| Y54F10BM.10 [Caenorhabditis elegans] 2.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.0E-42
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-11
Sequence
Target Sequence 
>C. ELEGANS:176212_AT
gatgctttgcattgacactggtgaacaaaccgaacactttgaggaattgattgataggct
caaatcaatgaagcctgtgcaggccgatattcttggtttgtggatgtcggttgatcagtg
cattaagctgtttccctacttcgaagcaggcaaactagagagaatcgcaatgcattatga
agaagaagaacttgataagtttcatgagctcactttgttggagcaatggaagaaggcaaa
acgtctgctttttgaaccacaagtcggagttgacacgaatgagacgccaattgaagcatt
ctttcatcgtgaatttttcactcttaacgttctacagatttcagatcaagatgccaggaa
gatcaaagagattcttctcaagaagccaaacttcaaaggctgcgtatttgaatgttggac
agaaacagatgtttcaagattgtttcagccaatcattgaatttccgagggaacatcctga
tacggctaagttcgaatactctaccaatggctctaaattttctatcgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTTTGCATTGACACTGGTGAA 679 413 279 Antisense
GTGCAGGCCGATATTCTTGGTTTGT 601 477 355 Antisense
AGTGCATTAAGCTGTTTCCCTACTT 43 61 395 Antisense
GTTTCCCTACTTCGAAGCAGGCAAA 454 449 408 Antisense
AGTTTCATGAGCTCACTTTGTTGGA 317 63 476 Antisense
ACGTCTGCTTTTTGAACCACAAGTC 300 95 519 Antisense
GAGACGCCAATTGAAGCATTCTTTC 147 395 559 Antisense
GTGAATTTTTCACTCTTAACGTTCT 523 463 587 Antisense
GGGAACATCCTGATACGGCTAAGTT 542 401 746 Antisense
AGTTCGAATACTCTACCAATGGCTC 78 65 767 Antisense
ATGGCTCTAAATTTTCTATCGTTGT 424 53 785 Antisense
Sequence Source Affymetrix Proprietary Database