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[176211_s_at]

Description F42H10.7 /REP_DB=WormBase Gene ID /WP=CE00169 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 83      6grp_total > 79      4grp_total > 23      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 595.9
(3)
P 		295.7
(-3)
P 		308.7
(-2.7)
P 		543.1
(1.9)
P 		300
B 613.3
(3)
P 		390
(-1.8)
P 		331.4
(-3)
P 		435.5
(-0.8)
P 		282
C 614
(3)
P 		275.2
(-3)
P 		320.8
(-2.2)
P 		563.6
(2.1)
P 		339
avr 607.7
(3) 		320.3
(-3) 		320.3
(-3) 		514.1
(1) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 329.6
(-3)
P 		445.4
(-0.9)
P 		411.8
(-1.5)
P 		431.1
(-1.2)
P 		413
(-1.5)
P 		666.9
(3)
P 		337
B 435.3
(-1.8)
P 		567
(0.1)
P 		370.1
(-2.7)
P 		353
(-3)
P 		572.1
(0.2)
P 		762
(3)
P 		409
C 380.6
(-2.7)
P 		500.8
(0.1)
P 		366.7
(-3)
P 		462.3
(-0.8)
P 		450.8
(-1)
P 		625
(3)
P 		258
avr 381.8
(-3) 		504.4
(-0.6) 		382.9
(-3) 		415.5
(-2.3) 		478.6
(-1.1) 		684.6
(3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 217
(3)
P 		64.2
(-3)
P 		80.7
(-2.4)
P 		79.5
(-2.4)
P 		153
B 195.6
(3)
P 		96.3
(-2)
P 		76.8
(-3)
P 		92.8
(-2.2)
P 		119
C 203.3
(3)
P 		79.1
(-3)
P 		111.8
(-1.4)
P 		95
(-2.2)
P 		124
avr 205.3
(3) 		79.9
(-3) 		89.8
(-2.5) 		89.1
(-2.6) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 60.8
(-3)
P 		158.4
(2.8)
P 		89.7
(-1.3)
P 		109.3
(-0.1)
P 		124.6
(0.8)
P 		162.4
(3)
P 		102
B 151.5
(-1.1)
P 		188.7
(0.1)
P 		89.9
(-3)
P 		93.5
(-2.9)
P 		232.4
(1.4)
P 		284.1
(3)
P 		194
C 141.1
(-0.5)
P 		152.8
(0.1)
P 		93.3
(-3)
P 		93
(-3)
P 		145.9
(-0.3)
P 		209.2
(3)
P 		116
avr 117.8
(-1.7) 		166.6
(0.6) 		91
(-3) 		98.6
(-2.6) 		167.6
(0.6) 		218.6
(3) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176211_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7093
Sequence Type Exemplar sequence
Representative Public ID F42H10.7 NCBI
Target Description F42H10.7 /REP_DB=WormBase Gene ID /WP=CE00169 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027410(11), NM_001027409(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027410 NCBI Caenorhabditis elegans F42H10.7b (F42H10.7) mRNA, complete cds. 11/11 None
NM_001027409 NCBI Caenorhabditis elegans F42H10.7a (F42H10.7) mRNA, complete cds. 11/11 None
SNAP00000027856 ENSEMBL cdna:SNAP chromosome:CEL140:III:8488364:8490245:-1 11/11 None
GENEFINDER00000027862 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8488364:8490245:-1 11/11 None
F42H10.7b ENSEMBL cdna:known chromosome:CEL140:III:8488273:8490255:-1 gene:F42H10.7 11/11 None
F42H10.7a ENSEMBL cdna:known chromosome:CEL140:III:8488291:8490245:-1 gene:F42H10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8488358-8490240(-) 100.0 100.0
Public Domain and Genome References
Ensembl F42H10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92077 Hypothetical protein F42H10.7b [Caenorhabditis elegans] ref|NP_001022581.1| F42H10.7b [Caenorhabditis elegans] sp|P34420|DGC14_CAEEL DGCR14 protein homolog (DiGeorge syndrome critical region 14 homolog) 0.0
blast AAA28021 Hypothetical protein F42H10.7a [Caenorhabditis elegans] ref|NP_001022580.1| F42H10.7a [Caenorhabditis elegans] 0.0
blast CAE71246 Hypothetical protein CBG18122 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176211_S_AT
accgaatccaaatcctgacgacatggattctcctcttatgacttggggagaaattgatgg
aacaccattccgacttgatgcgcctgacgttacagagcattcgttgcctggtgcggcgcc
tgtattcaagataccagaggttccgtatcgggagaaaattgcacaatctatgaatgattc
aatcgcggccaaatatagagacaagagaaaagttgcgatgagagcagctgaaggagctca
ccgaacacctggatttggatccaagcgagtctcagacaagcttgcacaattatctcctgc
tgctcaaaagttggcaaccaagaagcttggattaaaaatgttacctgctcacaaatctcc
tttcgcctcgccgaaaatcatgtcgaattggtcaagaccgtcaagttcaaagcgatccac
aactcctggttctgcatggagtcgtggttctactacacctggatcatcttggagccaagg
agcacaaactcctggcacacctgggattgaatctatgatccgaagaaaaggggataacgt
cggaccttcaacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGAATCCAAATCCTGACGACATG 339 87 1005 Antisense
TGGATTCTCCTCTTATGACTTGGGG 283 551 1028 Antisense
GACTTGATGCGCCTGACGTTACAGA 710 369 1076 Antisense
TACAGAGCATTCGTTGCCTGGTGCG 6 643 1095 Antisense
TTGCACAATTATCTCCTGCTGCTCA 197 705 1286 Antisense
AATGTTACCTGCTCACAAATCTCCT 560 163 1341 Antisense
GACCGTCAAGTTCAAAGCGATCCAC 588 381 1400 Antisense
TCCACAACTCCTGGTTCTGCATGGA 174 589 1420 Antisense
AGTCGTGGTTCTACTACACCTGGAT 497 59 1444 Antisense
ACTCCTGGCACACCTGGGATTGAAT 357 99 1492 Antisense
GGGATAACGTCGGACCTTCAACATC 253 495 1535 Antisense
Sequence Source Affymetrix Proprietary Database