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[176210_at]

Description Y48G1BM.F /REP_DB=WormBase Gene ID /WP=CE26117 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 4grp_high_8_8 > 21      6grp_total > 42      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 80.8
(0.2)
P 		44.6
(-3)
A 		82.7
(0.4)
A 		111.9
(3)
P 		67
B 69
(-3)
P 		85.3
(3)
P 		82
(1.8)
A 		85.1
(2.9)
A 		16
C 80.1
(3)
M 		59.7
(-3)
M 		71.7
(0.5)
P 		75.9
(1.8)
M 		20
avr 76.6
(-0.1) 		63.2
(-3) 		78.8
(0.4) 		91
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 66.8
(3)
A 		49.9
(0.4)
A 		33.9
(-2.1)
A 		51.9
(0.7)
M 		45.6
(-0.3)
A 		28
(-3)
A 		39
B 42.3
(-2.3)
A 		37.7
(-3)
A 		77.9
(3)
A 		61
(0.5)
A 		43.9
(-2.1)
A 		44.8
(-1.9)
M 		40
C 55.4
(1.8)
A 		8.7
(-3)
A 		66.8
(3)
A 		46
(0.9)
A 		48.5
(1.1)
A 		49.4
(1.2)
A 		58
avr 54.8
(2) 		32.1
(-3) 		59.5
(3) 		53
(1.6) 		46
(0) 		40.7
(-1.1) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 29.4
(3)
P 		9.7
(-3)
A 		21.6
(0.6)
A 		16.4
(-1)
P 		20
B 22
(3)
P 		21.1
(1.6)
P 		19
(-1.6)
A 		18.1
(-3)
A 		4
C 26.5
(3)
M 		17.2
(-1.1)
M 		25
(2.3)
P 		12.8
(-3)
M 		14
avr 26
(3) 		16
(-2.9) 		21.9
(0.6) 		15.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.3
(0)
A 		17.7
(3)
A 		7.4
(-2.7)
A 		13.2
(0.5)
M 		13.8
(0.9)
A 		6.8
(-3)
A 		11
B 14.7
(-1)
A 		12.6
(-3)
A 		18.9
(3)
A 		16.2
(0.4)
A 		17.8
(2)
A 		16.7
(0.9)
M 		6
C 20.5
(3)
A 		2.7
(-3)
A 		17
(1.8)
A 		9.3
(-0.8)
A 		15.7
(1.4)
A 		16.5
(1.7)
A 		18
avr 15.8
(3) 		11
(-3) 		14.4
(1.3) 		12.9
(-0.6) 		15.8
(3) 		13.3
(-0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18869
Sequence Type Exemplar sequence
Representative Public ID Y48G1BM.F NCBI
Target Description Y48G1BM.F /REP_DB=WormBase Gene ID /WP=CE26117 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058300 NCBI Caenorhabditis elegans Y48G1BM.5 (Y48G1BM.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000014678 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:224017:230773:-1 10/11 None
SNAP00000014667 ENSEMBL cdna:SNAP chromosome:CEL140:I:229090:230082:-1 11/11 None
Y48G1BM.5 ENSEMBL cdna:known chromosome:CEL140:I:229090:234973:-1 gene:Y48G1BM.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19870259-19871919(+) 48.14 48.14
chrI:229089-234973(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1BM.5
Entrez Gene 190038 Entrez gene
SwissProt Q965V1 EMBL-EBI
WormBase CE26117 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68497 Hypothetical protein Y48G1BM.5 [Caenorhabditis elegans] ref|NP_490701.1| Y48G1BM.5 [Caenorhabditis elegans] 0.0
blast AAF59577 Hypothetical protein Y54G2A.21 [Caenorhabditis elegans] ref|NP_500270.3| Y54G2A.21 [Caenorhabditis elegans] 0.0
blast AAK68496 Hypothetical protein Y48G1BM.4 [Caenorhabditis elegans] ref|NP_490700.1| Y48G1BM.4 [Caenorhabditis elegans] 0.0
blast AAK68494 Hypothetical protein Y48G1BM.2 [Caenorhabditis elegans] ref|NP_490704.1| Y48G1BM.2 [Caenorhabditis elegans] 0.0
blast AAK68497 Hypothetical protein Y48G1BM.5 [Caenorhabditis elegans] ref|NP_490701.1| Y48G1BM.5 [Caenorhabditis elegans] 1.0E-133
blast AAK68497 Hypothetical protein Y48G1BM.5 [Caenorhabditis elegans] ref|NP_490701.1| Y48G1BM.5 [Caenorhabditis elegans] 1.0E-104
blast NP_490921 Y20F4.5 [Caenorhabditis elegans] gb|AAL00865.1| Hypothetical protein Y20F4.5 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 1.4E-13
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 4.7E-19
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 6.1E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490701.1 1 37-59
Y48G1BM.5 1 37-59
Sequence
Target Sequence 
>C. ELEGANS:176210_AT
gtcgaagccaattcattgccggatatcatcgaggagatgttcaaggacgtcgccgagaag
gcaaaggatacagatctcaaagactatatgcaagactatcaagctgactataccgagctg
actccgcgtaactttatacgacccagacgggctgacgatccaatcgtaagcctcaaaaaa
catcttgaagacaactgcgcggaagattggcgacgtactttggttgatgtccaacgggac
agaaaactaaaggaaaacctcctgaacctgcatattcaacaaaagacgggtaatactacc
tccagactcgtggagaattggcaagaatttctcgatggagatccgtgccctccctgcaaa
aaagaccatccacttcaaacgtgcacaatgggtgcgattgaagtcaaacgcttctgcatc
aacaatggtagatgcacgatttgctcgtcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAAGCCAATTCATTGCCGGATA 304 473 2440 Antisense
GAGGAGATGTTCAAGGACGTCGCCG 64 405 2470 Antisense
AAGCTGACTATACCGAGCTGACTCC 110 149 2540 Antisense
GCTGACTCCGCGTAACTTTATACGA 239 297 2556 Antisense
ATACGACCCAGACGGGCTGACGATC 530 21 2575 Antisense
GATTGGCGACGTACTTTGGTTGATG 379 435 2644 Antisense
AAACCTCCTGAACCTGCATATTCAA 626 125 2694 Antisense
GACGGGTAATACTACCTCCAGACTC 74 377 2724 Antisense
TGCCCTCCCTGCAAAAAAGACCATC 522 581 2785 Antisense
AGACCATCCACTTCAAACGTGCACA 155 71 2802 Antisense
GTAGATGCACGATTTGCTCGTCACC 363 457 2867 Antisense
Sequence Source Affymetrix Proprietary Database