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[176209_at]

Description Y58A7A.5 /REP_DB=WormBase Gene ID /WP=CE26198 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 25      4grp_highest_8_8 > 43      4grp_high_8_8 > 48      6grp_highest_nonorm > 51      6grp_total > 14      4grp_total > 55      6grp_highest_sub > 02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 326.9
(3)
P 		186
(-3)
P 		239.9
(-0.7)
P 		243.8
(-0.5)
P 		141
B 426.9
(3)
P 		218.8
(-3)
P 		265.8
(-1.6)
P 		244.3
(-2.3)
P 		208
C 449.4
(3)
P 		225.1
(-3)
P 		346.1
(0.2)
P 		231.8
(-2.8)
P 		224
avr 401.1
(3) 		210
(-3) 		283.9
(-0.7) 		240
(-2.1) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 730.4
(2.6)
P 		752.6
(3)
P 		500.4
(-1.5)
P 		604.9
(0.3)
P 		419.6
(-3)
P 		465.8
(-2.2)
P 		333
B 830.9
(3)
P 		731.4
(1.5)
P 		590.9
(-0.6)
P 		531.2
(-1.5)
P 		470.7
(-2.4)
P 		433.4
(-3)
P 		398
C 689.1
(2.6)
P 		710.2
(3)
P 		451.4
(-1.6)
P 		598.8
(1)
P 		371.2
(-3)
P 		457.9
(-1.5)
P 		339
avr 750.1
(3) 		731.4
(2.7) 		514.2
(-1.3) 		578.3
(-0.1) 		420.5
(-3) 		452.4
(-2.4) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 119
(3)
P 		40.4
(-2.7)
P 		62.7
(-1.1)
P 		35.7
(-3)
P 		83
B 136.1
(3)
P 		54
(-2.9)
P 		61.6
(-2.3)
P 		52.1
(-3)
P 		84
C 148.8
(3)
P 		64.7
(-1.6)
P 		120.6
(1.5)
P 		39.1
(-3)
P 		110
avr 134.6
(3) 		53
(-2.3) 		81.6
(-0.4) 		42.3
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 134.6
(-2)
P 		267.7
(3)
P 		109
(-3)
P 		153.4
(-1.3)
P 		126.6
(-2.3)
P 		113.4
(-2.8)
P 		159
B 289.1
(3)
P 		243.5
(1.2)
P 		143.5
(-2.9)
P 		140.7
(-3)
P 		191.2
(-1)
P 		161.6
(-2.2)
P 		148
C 255.4
(3)
P 		216.7
(1.3)
P 		114.9
(-3)
P 		120.4
(-2.8)
P 		120.1
(-2.8)
P 		153.3
(-1.4)
P 		141
avr 226.4
(2.2) 		242.6
(3) 		122.5
(-3) 		138.2
(-2.2) 		146
(-1.8) 		142.8
(-2) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15575
Sequence Type Exemplar sequence
Representative Public ID Y58A7A.5 NCBI
Target Description Y58A7A.5 /REP_DB=WormBase Gene ID /WP=CE26198 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071961 NCBI Caenorhabditis elegans Y58A7A.5 (Y58A7A.5) mRNA, complete cds. 11/11 None
SNAP00000010496 ENSEMBL cdna:SNAP chromosome:CEL140:V:5085780:5086766:-1 11/11 None
GENEFINDER00000010498 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5084913:5086766:-1 9/11 None
Y58A7A.5 ENSEMBL cdna:known chromosome:CEL140:V:5085780:5086934:-1 gene:Y58A7A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5085779-5086934(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y58A7A.5
Entrez Gene 190383 Entrez gene
SwissProt Q966A4 EMBL-EBI
WormBase CE26198 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84619 Hypothetical protein Y58A7A.5 [Caenorhabditis elegans] ref|NP_504362.1| Y58A7A.5 [Caenorhabditis elegans] 1.0E-177
blast AAK84619 Hypothetical protein Y58A7A.5 [Caenorhabditis elegans] ref|NP_504362.1| Y58A7A.5 [Caenorhabditis elegans] 1.0E-166
blast AAK84619 Hypothetical protein Y58A7A.5 [Caenorhabditis elegans] ref|NP_504362.1| Y58A7A.5 [Caenorhabditis elegans] 1.0E-155
blast AAK84618 Hypothetical protein Y58A7A.4 [Caenorhabditis elegans] ref|NP_504361.1| Y58A7A.4 [Caenorhabditis elegans] 1.0E-147
blast AAK84618 Hypothetical protein Y58A7A.4 [Caenorhabditis elegans] ref|NP_504361.1| Y58A7A.4 [Caenorhabditis elegans] 1.0E-141
blast AAK84617 Hypothetical protein Y58A7A.3 [Caenorhabditis elegans] ref|NP_504360.1| Y58A7A.3 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504362.1 1 16-35
Y58A7A.5 1 16-35
GENEFINDER00000010498 1 339-361
Sequence
Target Sequence 
>C. ELEGANS:176209_AT
catctacccagagaagtcaacttttgctgttcactcaagagttcttaacaaagaatacaa
acagggagaatttgaaatcagaagtgccaaaacatcatcagcgagaggacaagattattc
gaatttcctctcgaaatctagagagtttagcaagaaatctaatgcaaaagtgatggcact
acgaagtgagaaagtcgatgaaaatgtcaagagccaaccaacagtatcttacaatatcta
taaaactcatagaagccaagatgttgttggaaaagaaatgttcaaagccaaagtcgtttc
aaagtcaaggagacatcgtccaaataaaaaggttgatatggagaattatgatgatttgga
tgaagaatttgaagatgatgaagacgaaattgtggattcacatcgtcctactgatgttct
cgatcttgctgccttcaatgtgagatctctgtcaaaacaagcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTACCCAGAGAAGTCAACTTTT 367 209 561 Antisense
GTCAACTTTTGCTGTTCACTCAAGA 349 463 576 Antisense
TCGAATTTCCTCTCGAAATCTAGAG 611 599 679 Antisense
ATGAAAATGTCAAGAGCCAACCAAC 133 45 758 Antisense
GAGCCAACCAACAGTATCTTACAAT 50 385 771 Antisense
TGTTCAAAGCCAAAGTCGTTTCAAA 208 561 839 Antisense
AATTGTGGATTCACATCGTCCTACT 255 179 948 Antisense
TCGTCCTACTGATGTTCTCGATCTT 654 603 963 Antisense
CTACTGATGTTCTCGATCTTGCTGC 557 225 968 Antisense
CTTGCTGCCTTCAATGTGAGATCTC 184 219 985 Antisense
GAGATCTCTGTCAAAACAAGCCCAT 270 397 1002 Antisense
Sequence Source Affymetrix Proprietary Database