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[176208_at]

Description Y48G1BM.D /REP_DB=WormBase Gene ID /WP=CE26115 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 45      4grp_total > 35      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 94
(-3)
A 		147.1
(3)
A 		102.7
(-2)
A 		111
(-1.1)
A 		53
B 103.1
(-2.9)
A 		154.3
(3)
A 		102.3
(-3)
A 		123.7
(-0.5)
A 		52
C 117.8
(-3)
A 		168.1
(3)
A 		124.6
(-2.2)
A 		161.7
(2.2)
A 		50
avr 105
(-3) 		156.5
(3) 		109.9
(-2.4) 		132.1
(0.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 36.9
(-3)
A 		90.6
(0.3)
A 		104.7
(1.2)
A 		66.7
(-1.2)
A 		51.9
(-2.1)
A 		134.4
(3)
A 		98
B 112.6
(1)
A 		117.6
(1.3)
A 		143.2
(3)
A 		50.8
(-3)
A 		96.5
(-0)
A 		78.1
(-1.2)
A 		92
C 113.4
(1.2)
A 		126.3
(3)
A 		90.8
(-1.9)
A 		92.3
(-1.7)
A 		82.8
(-3)
A 		95.9
(-1.2)
A 		44
avr 87.6
(-0.5) 		111.5
(2.8) 		112.9
(3) 		69.9
(-3) 		77.1
(-2) 		102.8
(1.6) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 34.2
(3)
A 		31.9
(2.2)
A 		26.9
(0.6)
A 		16.3
(-3)
A 		18
B 32.9
(0.8)
A 		38.1
(3)
A 		23.7
(-3)
A 		26.4
(-1.9)
A 		14
C 39
(0.3)
A 		48.3
(3)
A 		43.4
(1.6)
A 		27.3
(-3)
A 		21
avr 35.4
(1.5) 		39.4
(3) 		31.3
(-0) 		23.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 6.8
(-3)
A 		32.2
(2.9)
A 		22.8
(0.7)
A 		16.9
(-0.7)
A 		15.6
(-1)
A 		32.7
(3)
A 		26
B 39.2
(3)
A 		39.1
(3)
A 		34.8
(2)
A 		13.5
(-3)
A 		39.2
(3)
A 		29.1
(0.6)
A 		26
C 42
(3)
A 		38.6
(2.1)
A 		23.1
(-1.8)
A 		18.6
(-3)
A 		26.8
(-0.9)
A 		32.1
(0.5)
A 		23
avr 29.3
(0.8) 		36.6
(3) 		26.9
(0.1) 		16.3
(-3) 		27.2
(0.2) 		31.3
(1.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18842
Sequence Type Exemplar sequence
Representative Public ID Y48G1BM.D NCBI
Target Description Y48G1BM.D /REP_DB=WormBase Gene ID /WP=CE26115 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058302 NCBI Caenorhabditis elegans Y48G1BM.7 (Y48G1BM.7) mRNA, complete cds. 11/11 None
GENEFINDER00000014677 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:231691:239214:-1 10/11 None
Y48G1BM.7 ENSEMBL cdna:known chromosome:CEL140:I:238616:239021:-1 gene:Y48G1BM.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014678 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:238615-239021(-) 94.05 100.0
chrI:226846-227246(-) 97.62 97.62
Public Domain and Genome References
Gene Title
Ensembl Y48G1BM.7
Entrez Gene 190040 Entrez gene
SwissProt Q965U9 EMBL-EBI
WormBase CE26115 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68497 Hypothetical protein Y48G1BM.5 [Caenorhabditis elegans] ref|NP_490701.1| Y48G1BM.5 [Caenorhabditis elegans] 0.0
blast AAF59577 Hypothetical protein Y54G2A.21 [Caenorhabditis elegans] ref|NP_500270.3| Y54G2A.21 [Caenorhabditis elegans] 0.0
blast AAK68498 Hypothetical protein Y48G1BM.6 [Caenorhabditis elegans] ref|NP_490702.1| Y48G1BM.6 [Caenorhabditis elegans] 0.0
blast AAK68499 Hypothetical protein Y48G1BM.7 [Caenorhabditis elegans] ref|NP_490703.1| Y48G1BM.7 [Caenorhabditis elegans] 4.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 8.8E-110
Sequence
Target Sequence 
>C. ELEGANS:176208_AT
gagcgacgatacggagcgagctgcagcgtcggtggcaccaggaaaggaactctcctcccc
actcttggttcggttttgctggtctcttccccccccccccccccccccgttattgacagc
tcccagtcagactaattgccgacgtttcctacctttccctccctttatttggaaagtact
aaagacccgcgtggcaggacgtgatattctcacaccagacaattccctctctcttgtgta
cgacccactcccctctgttgattatctcccctttggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGACGATACGGAGCGAGCTGCA 370 385 15 Antisense
ACGATACGGAGCGAGCTGCAGCGTC 627 93 20 Antisense
CTGCAGCGTCGGTGGCACCAGGAAA 56 237 35 Antisense
CCCACTCTTGGTTCGGTTTTGCTGG 404 257 72 Antisense
CCGTTATTGACAGCTCCCAGTCAGA 153 265 121 Antisense
GACAGCTCCCAGTCAGACTAATTGC 289 369 129 Antisense
CAGACTAATTGCCGACGTTTCCTAC 153 203 142 Antisense
GTACTAAAGACCCGCGTGGCAGGAC 297 459 190 Antisense
GCGTGGCAGGACGTGATATTCTCAC 696 291 203 Antisense
ATATTCTCACACCAGACAATTCCCT 322 17 218 Antisense
CTGTTGATTATCTCCCCTTTGGAGT 227 239 269 Antisense
Sequence Source Affymetrix Proprietary Database