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[176207_s_at] 7TM chemoreceptor, srz family /// 7TM chemoreceptor, srz family

Description Y119D3B.T /REP_DB=WormBase Gene ID /WP=CE26491 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 31      4grp_total > 13      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 48.6
(1.1)
A 		43.7
(0.7)
A 		6.1
(-3)
A 		67.7
(3)
A 		62
B 41.5
(1.8)
A 		6.5
(-3)
A 		49.9
(3)
A 		8.4
(-2.7)
A 		43
C 40.3
(-1.2)
A 		46.3
(-0.9)
A 		6.2
(-3)
A 		120.6
(3)
A 		114
avr 43.5
(0) 		32.2
(-1.5) 		20.7
(-3) 		65.6
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 7.7
(-2.6)
A 		42.5
(0.5)
A 		70.4
(3)
A 		29.8
(-0.7)
A 		12
(-2.3)
A 		3.7
(-3)
A 		67
B 44.4
(0.8)
A 		51.2
(1.5)
A 		66.4
(3)
A 		19.7
(-1.7)
A 		40.8
(0.4)
A 		6.3
(-3)
A 		60
C 49.8
(-0.6)
A 		58.4
(0.4)
A 		28.8
(-3)
A 		80.3
(3)
A 		54.1
(-0.1)
A 		45.9
(-1)
A 		52
avr 34
(-0.5) 		50.7
(2.3) 		55.2
(3) 		43.3
(1) 		35.6
(-0.2) 		18.6
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 17.7
(3)
A 		9.5
(-0.1)
A 		1.6
(-3)
A 		9.9
(0.1)
A 		16
B 13.2
(3)
A 		1.6
(-3)
A 		11.6
(2.2)
A 		1.8
(-2.9)
A 		12
C 13.4
(0.7)
A 		13.3
(0.7)
A 		2.1
(-3)
A 		20.3
(3)
A 		18
avr 14.8
(3) 		8.1
(-1.1) 		5.1
(-3) 		10.7
(0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.4
(-2.8)
A 		15.1
(2.9)
A 		15.3
(3)
A 		7.6
(-0.2)
A 		3.6
(-1.9)
A 		0.9
(-3)
A 		14
B 15.5
(2.4)
A 		17
(3)
A 		16.1
(2.6)
A 		5.2
(-1.8)
A 		16.6
(2.8)
A 		2.4
(-3)
A 		15
C 18.5
(3)
A 		17.8
(2.6)
A 		7.3
(-3)
A 		16.2
(1.8)
A 		17.5
(2.5)
A 		15.4
(1.3)
A 		11
avr 11.8
(0.2) 		16.6
(3) 		12.9
(0.9) 		9.7
(-1) 		12.6
(0.7) 		6.2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176207_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19032
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.T NCBI
Target Description Y119D3B.T /REP_DB=WormBase Gene ID /WP=CE26491 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064960(11), NM_064956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064960 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-9) (srz-9) mRNA, complete cds. 11/11 None
NM_064956 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-8) (srz-8) mRNA, complete cds. 11/11 None
Y119D3B.5 ENSEMBL cdna:known chromosome:CEL140:III:1255541:1256919:1 gene:Y119D3B.5 11/11 None
Y119D3B.3 ENSEMBL cdna:known chromosome:CEL140:III:1263982:1265360:1 gene:Y119D3B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1263981-1265360(+) 100.0 100.0
chrIII:1255540-1256919(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
7TM chemoreceptor, srz family
Gene Symbol srz-9
srz-8
Ensembl Y119D3B.5
Y119D3B.3
Entrez Gene 191037 Entrez gene
191039 Entrez gene
SwissProt Q9BLB2 EMBL-EBI
WormBase CE37280 Wormbase
CE37280 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29721 Serpentine receptor, class z protein 8 [Caenorhabditis elegans] gb|AAK29723.2| Serpentine receptor, class z protein 9 [Caenorhabditis elegans] ref|NP_497357.2| Serpentine Receptor, class Z family member (srz-8) [Caenorhabditis elegans] ref|NP_497361.2| Serpentine Receptor, class Z family member (srz-9) [Caenorhabditis elegans] 1.0E-142
blast T33432 hypothetical protein T17A3.9 - Caenorhabditis elegans 4.0E-15
blast AAU20845 Hypothetical protein F56D6.7 [Caenorhabditis elegans] ref|NP_001023234.1| F56D6.7 [Caenorhabditis elegans] 1.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497361.2 6 10-32,53-75,95-117,124-146,161-183,190-212
NP_497357.2 6 10-32,53-75,95-117,124-146,161-183,190-212
Y119D3B.5 6 10-32,53-75,95-117,124-146,161-183,190-212
Y119D3B.3 6 10-32,53-75,95-117,124-146,161-183,190-212
Sequence
Target Sequence 
>C. ELEGANS:176207_S_AT
ttaatagctctacttgcaattcgaaagatttttattttctttttcccggacacgaaacaa
tatttaatggttaccgaatatacactaaagattactaccaattgtattttattggttttt
gtgctaggatttttagcattaaaaagcgggttttttggcaaaaacgcgaacattatggct
tatgtactgctcatcgttatactccccatttgtgcattatttcaaattctgattcaattt
gtctcagctcagcgtaataagtacattttgtgccaatttattctggtgacttgttgtata
atgtctcttttccgagttcaggccacaattcatgaggtttttcaagccgctgagttatca
gattgctttctcactcctgtctttattaaaatatcctatttaatgtaccatcggcccagt
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATAGCTCTACTTGCAATTCGAA 47 685 319 Antisense
ATGGCTTATGTACTGCTCATCGTTA 138 53 493 Antisense
ATACTCCCCATTTGTGCATTATTTC 2 25 517 Antisense
TTCAATTTGTCTCAGCTCAGCGTAA 62 685 551 Antisense
GTGCCAATTTATTCTGGTGACTTGT 150 477 588 Antisense
CTTGTTGTATAATGTCTCTTTTCCG 411 217 608 Antisense
TCTTTTCCGAGTTCAGGCCACAATT 335 615 624 Antisense
CAGGCCACAATTCATGAGGTTTTTC 695 207 637 Antisense
GAGGTTTTTCAAGCCGCTGAGTTAT 197 401 652 Antisense
TTTCTCACTCCTGTCTTTATTAAAA 36 673 685 Antisense
ATTTAATGTACCATCGGCCCAGTTT 517 13 716 Antisense
Sequence Source Affymetrix Proprietary Database