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[176203_at]

Description Y82E9BL.K /REP_DB=WormBase Gene ID /WP=CE26617 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 24      4grp_total > 54      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 206.5
(3)
P 		88.3
(-1.8)
A 		59
(-3)
A 		79
(-2.2)
A 		148
B 182.5
(3)
P 		111.7
(0.3)
A 		93.6
(-0.4)
M 		27.2
(-3)
A 		155
C 212.1
(3)
P 		89.2
(-0.8)
A 		98.9
(-0.5)
A 		15.8
(-3)
A 		196
avr 200.4
(3) 		96.4
(-0.9) 		83.8
(-1.4) 		40.7
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 270.7
(3)
P 		164.6
(0.2)
A 		184.3
(0.7)
A 		119.7
(-1)
P 		71.5
(-2.2)
A 		41.9
(-3)
A 		229
B 227.9
(3)
P 		155.1
(0.3)
P 		222.8
(2.8)
P 		77.5
(-2.7)
A 		90.7
(-2.2)
M 		69
(-3)
A 		159
C 181.1
(3)
P 		150.9
(1.6)
P 		107.5
(-0.5)
A 		109.3
(-0.4)
A 		53.1
(-3)
A 		59.5
(-2.7)
P 		128
avr 226.6
(3) 		156.9
(0.5) 		171.5
(1.1) 		102.2
(-1.4) 		71.8
(-2.5) 		56.8
(-3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 75.2
(3)
P 		19.2
(-2.3)
A 		15.4
(-2.6)
A 		11.6
(-3)
A 		64
B 58.2
(3)
P 		27.6
(-0.5)
A 		21.7
(-1.2)
M 		5.8
(-3)
A 		52
C 70.2
(3)
P 		25.6
(-1)
A 		34.5
(-0.2)
A 		2.7
(-3)
A 		68
avr 67.9
(3) 		24.1
(-1.3) 		23.9
(-1.3) 		6.7
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 49.9
(1.9)
P 		58.5
(3)
A 		40.1
(0.7)
A 		30.4
(-0.5)
P 		21.6
(-1.6)
A 		10.2
(-3)
A 		48
B 79.3
(3)
P 		51.6
(0.2)
P 		54.1
(0.4)
P 		20.5
(-3)
A 		36.9
(-1.3)
M 		25.7
(-2.5)
A 		59
C 67.1
(3)
P 		46
(0.5)
P 		27.3
(-1.8)
A 		22
(-2.4)
A 		17.2
(-3)
A 		19.9
(-2.7)
P 		50
avr 65.4
(3) 		52
(1.3) 		40.5
(-0.2) 		24.3
(-2.3) 		25.2
(-2.2) 		18.6
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19085
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.K NCBI
Target Description Y82E9BL.K /REP_DB=WormBase Gene ID /WP=CE26617 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064977(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064977 NCBI Caenorhabditis elegans Y82E9BL.13 (Y82E9BL.13) mRNA, complete cds. 9/11 None
SNAP00000041764 ENSEMBL cdna:SNAP chromosome:CEL140:III:1306400:1308266:-1 9/11 None
GENEFINDER00000041784 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1306407:1308914:-1 9/11 None
Y82E9BL.13 ENSEMBL cdna:known chromosome:CEL140:III:1305794:1308914:-1 gene:Y82E9BL.13 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1306748-1308914(-) 95.7 100.0
Public Domain and Genome References
Gene Title
Ensembl Y82E9BL.13
Entrez Gene 190760 Entrez gene
SwissProt Q9GR41 EMBL-EBI
WormBase CE27541 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG37978 Hypothetical protein Y82E9BL.13 [Caenorhabditis elegans] ref|NP_497378.1| Y82E9BL.13 [Caenorhabditis elegans] 0.0
blast AAG37978 Hypothetical protein Y82E9BL.13 [Caenorhabditis elegans] ref|NP_497378.1| Y82E9BL.13 [Caenorhabditis elegans] 1.0E-159
blast AAG37978 Hypothetical protein Y82E9BL.13 [Caenorhabditis elegans] ref|NP_497378.1| Y82E9BL.13 [Caenorhabditis elegans] 1.0E-130
blast CAB03495 Hypothetical protein ZC47.7 [Caenorhabditis elegans] gb|AAK39598.1| Hypothetical protein Y119D3B.19 [Caenorhabditis elegans] ref|NP_497362.1| ZC47.7 [Caenorhabditis elegans] ref|NP_497358.1| Y119D3B.19 [Caenorhabditis elegans] 1.0E-54
blast CAB03495 Hypothetical protein ZC47.7 [Caenorhabditis elegans] gb|AAK39598.1| Hypothetical protein Y119D3B.19 [Caenorhabditis elegans] ref|NP_497362.1| ZC47.7 [Caenorhabditis elegans] ref|NP_497358.1| Y119D3B.19 [Caenorhabditis elegans] 2.0E-40
blast AAG37975 Hypothetical protein Y82E9BL.10 [Caenorhabditis elegans] ref|NP_497384.1| Y82E9BL.10 [Caenorhabditis elegans] 4.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.9E-38
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.2E-38
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.7E-45
Sequence
Target Sequence 
>C. ELEGANS:176203_AT
agatgatacccagcgccgagataaaacaattgtaggagcagactgtattgaaatggcgct
gagtgtgctggaaatgtgcttgaaaaagccgttaaagacattgttgctgtctataaactc
actttctgaggatagatttaaaaattttgatgctttaactgatagactccaagcagtgaa
gccactagatgtagaatgtttgctcctgacagacctgagccttgcccaatgtgctcatct
cttaccgtttttcgaggcaggaaagctggaaagaatcgcaataaataatgatgaagagga
attcaacaagtttgaggagatcactgtattggagcagtggaagaaggcgaaacgtctaca
cttgaatccatataagggatttgacacaagctcggtgtcaattgaatctttttttcattg
caagtggttttcaattacagtgctcacgatttcagctcaagatgctaggaagattgaaga
ggtgagaagtaggctttatacagtgcgcgtcaaggctataggaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGATACCCAGCGCCGAGATAAA 408 67 411 Antisense
TGCTGTCTATAAACTCACTTTCTGA 406 583 515 Antisense
TAGACTCCAAGCAGTGAAGCCACTA 11 653 573 Antisense
TTTGCTCCTGACAGACCTGAGCCTT 619 667 609 Antisense
TGAGCCTTGCCCAATGTGCTCATCT 401 569 626 Antisense
CTCATCTCTTACCGTTTTTCGAGGC 534 229 644 Antisense
GAAGAAGGCGAAACGTCTACACTTG 250 339 750 Antisense
AAGTGGTTTTCAATTACAGTGCTCA 425 159 832 Antisense
ACAGTGCTCACGATTTCAGCTCAAG 234 107 847 Antisense
GTAGGCTTTATACAGTGCGCGTCAA 437 455 899 Antisense
AGTGCGCGTCAAGGCTATAGGACCC 292 59 912 Antisense
Sequence Source Affymetrix Proprietary Database