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[176201_at]

Description Y48G1BM.C /REP_DB=WormBase Gene ID /WP=CE26114 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 37      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 52
(-0)
A 		12.6
(-2.7)
A 		8.3
(-3)
A 		96.3
(3)
A 		88
B 65.7
(3)
A 		7
(-3)
A 		59.4
(2.4)
A 		62.2
(2.6)
A 		59
C 50.6
(2.7)
A 		38.6
(1)
A 		9.4
(-3)
A 		52.7
(3)
A 		43
avr 56.1
(1.3) 		19.4
(-3) 		25.7
(-2.3) 		70.4
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 46.4
(3)
A 		27.4
(-0)
A 		45.1
(2.8)
A 		36.2
(1.4)
A 		33.7
(1)
A 		8.5
(-3)
A 		38
B 59.8
(3)
A 		25.2
(-1)
A 		8.4
(-3)
A 		48.2
(1.6)
A 		29.2
(-0.6)
A 		41
(0.8)
A 		51
C 32.7
(-1.2)
A 		95.6
(3)
A 		9.9
(-2.7)
A 		32.4
(-1.2)
A 		6
(-3)
A 		65.8
(1)
A 		90
avr 46.3
(2.3) 		49.4
(3) 		21.1
(-3) 		38.9
(0.8) 		23
(-2.6) 		38.4
(0.7) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.9
(3)
A 		2.7
(-2.8)
A 		2.2
(-3)
A 		14.1
(1.3)
A 		17
B 21
(3)
A 		1.7
(-3)
A 		13.8
(0.8)
A 		13.3
(0.6)
A 		19
C 16.8
(3)
A 		11.1
(0.5)
A 		3.3
(-3)
A 		8.9
(-0.5)
A 		14
avr 18.9
(3) 		5.2
(-3) 		6.4
(-2.5) 		12.1
(0) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.5
(1.7)
A 		9.7
(2.6)
A 		9.8
(2.7)
A 		9.2
(2.3)
A 		10.2
(3)
A 		2.1
(-3)
A 		8
B 20.8
(3)
A 		8.4
(-1)
A 		2
(-3)
A 		12.8
(0.4)
A 		11.9
(0.2)
A 		15.3
(1.2)
A 		19
C 12.1
(-0.8)
A 		29.2
(3)
A 		2.5
(-2.9)
A 		6.5
(-2)
A 		2
(-3)
A 		22
(1.4)
A 		27
avr 13.8
(1.9) 		15.8
(3) 		4.8
(-3) 		9.5
(-0.4) 		8
(-1.3) 		13.1
(1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18847
Sequence Type Exemplar sequence
Representative Public ID Y48G1BM.C NCBI
Target Description Y48G1BM.C /REP_DB=WormBase Gene ID /WP=CE26114 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058304 NCBI Caenorhabditis elegans Y48G1BM.8 (Y48G1BM.8) mRNA, complete cds. 11/11 None
SNAP00000014672 ENSEMBL cdna:SNAP chromosome:CEL140:I:248624:256642:-1 10/11 None
GENEFINDER00000014673 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:248624:251580:-1 11/11 None
Y48G1BM.8 ENSEMBL cdna:known chromosome:CEL140:I:248624:251580:-1 gene:Y48G1BM.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:248623-251580(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G1BM.8
Entrez Gene 190041 Entrez gene
SwissProt Q965U7 EMBL-EBI
WormBase CE26114 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68500 Hypothetical protein Y48G1BM.8 [Caenorhabditis elegans] ref|NP_490705.1| Y48G1BM.8 [Caenorhabditis elegans] 1.0E-173
blast AAK68501 Hypothetical protein Y48G1BM.9 [Caenorhabditis elegans] ref|NP_490707.2| Y48G1BM.9 [Caenorhabditis elegans] 5.0E-96
blast AAK68500 Hypothetical protein Y48G1BM.8 [Caenorhabditis elegans] ref|NP_490705.1| Y48G1BM.8 [Caenorhabditis elegans] 7.0E-90
blast CAE74309 Hypothetical protein CBG22017 [Caenorhabditis briggsae] 8.0E-86
blast AAB88353 Puf (pumilio/fbf) domain-containing protein 7 [Caenorhabditis elegans] ref|NP_500820.1| PUF (Pumilio/FBF) domain-containing family member (puf-7) [Caenorhabditis elegans] 7.0E-36
blast CAB04133 Hypothetical protein F18A11.1 [Caenorhabditis elegans] ref|NP_496773.1| PUF (Pumilio/FBF) domain-containing family member (puf-6) [Caenorhabditis elegans] 6.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000082 EMBL-EBI SEA domain 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000014672 1 205-227
Sequence
Target Sequence 
>C. ELEGANS:176201_AT
acagctatgccttcggatctggatcttcagacgatgagactgcaccaccggtggctccga
tcaccatctcgctccaggatgtactgctcaacggtcagctgatcgattttttaatcgatc
gatacggtgtaaaggaatcggcggacgttggaaacgttcagaatgccggtcagatggcgg
tgccggagccaaatgatgctcgtaacaagagaaaacgattcacacctgaaagaatctcac
cgaatggacgtcaaagtgaaatggaagagcctcaagatacccatcggaattcggaatctc
ctgatgctcaacaattccaatgctccatttgtaatgatgaatttcggacaggctcgccac
gtctaccatctgcatacccttccctatccgtattactgcggtatctgtgggctgtcgtat
actgcaacaaggcttgtgcactggaatcacgtcagagttcaccatgctggagagatacca
cttcgtcagggtcggaccatggcggagttgagggatcagtaatacataccatgcaagcta
aacatcaaaaatttattttcagcgccgccgaacttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCTATGCCTTCGGATCTGGATC 187 109 350 Antisense
TCTCGCTCCAGGATGTACTGCTCAA 444 611 416 Antisense
TACTGCTCAACGGTCAGCTGATCGA 482 647 431 Antisense
GCCGGTCAGATGGCGGTGCCGGAGC 553 281 514 Antisense
TTCGGAATCTCCTGATGCTCAACAA 354 695 639 Antisense
TGCTCAACAATTCCAATGCTCCATT 108 581 654 Antisense
CCTTCCCTATCCGTATTACTGCGGT 367 269 727 Antisense
TTACTGCGGTATCTGTGGGCTGTCG 655 681 742 Antisense
GAATCACGTCAGAGTTCACCATGCT 444 327 793 Antisense
AGATACCACTTCGTCAGGGTCGGAC 636 63 822 Antisense
TTATTTTCAGCGCCGCCGAACTTAC 568 677 902 Antisense
Sequence Source Affymetrix Proprietary Database