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[176199_at]

Description Y69A2AR.T /REP_DB=WormBase Gene ID /WP=CE26567 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 05      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 275.4
(2.8)
A 		155.9
(-2.5)
A 		143.7
(-3)
A 		279.5
(3)
A 		136
B 258.5
(3)
A 		179.7
(-0.2)
A 		112.9
(-3)
A 		144.3
(-1.7)
A 		146
C 279.6
(3)
P 		113.9
(-3)
A 		123.4
(-2.7)
A 		231.2
(1.2)
A 		166
avr 271.2
(3) 		149.8
(-2) 		126.7
(-3) 		218.3
(0.8) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 207.3
(3)
A 		143.9
(1)
A 		147.9
(1.1)
M 		98.2
(-0.5)
P 		135.7
(0.7)
A 		19.4
(-3)
A 		188
B 219.9
(3)
A 		152.9
(-0.4)
A 		124.2
(-1.8)
A 		101.5
(-3)
A 		147.8
(-0.7)
P 		116.5
(-2.2)
P 		118
C 179.4
(2.9)
A 		181
(3)
P 		131.1
(0.3)
A 		72
(-3)
A 		137.8
(0.6)
A 		127.5
(0.1)
P 		109
avr 202.2
(3) 		159.3
(0.8) 		134.4
(-0.6) 		90.6
(-2.9) 		140.4
(-0.2) 		87.8
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 100.3
(3)
A 		33.8
(-3)
A 		37.6
(-2.7)
A 		40.9
(-2.4)
A 		67
B 82.4
(3)
A 		44.4
(-1.1)
A 		26.2
(-3)
A 		30.7
(-2.5)
A 		56
C 92.6
(3)
P 		32.8
(-3)
A 		43
(-2)
A 		39
(-2.4)
A 		60
avr 91.8
(3) 		37
(-2.9) 		35.6
(-3) 		36.9
(-2.9) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 38.2
(1.3)
A 		51.2
(3)
A 		32.2
(0.5)
M 		24.9
(-0.4)
P 		40.9
(1.7)
A 		4.7
(-3)
A 		47
B 76.5
(3)
A 		50.9
(-0.1)
A 		30.2
(-2.6)
A 		26.9
(-3)
A 		60.1
(1)
P 		43.4
(-1)
P 		50
C 66.5
(3)
A 		55.2
(1.7)
P 		33.4
(-0.8)
A 		14.5
(-3)
A 		44.6
(0.5)
A 		42.7
(0.3)
P 		52
avr 60.4
(3) 		52.4
(1.7) 		31.9
(-1.5) 		22.1
(-3) 		48.5
(1.1) 		30.3
(-1.7) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19262
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.T NCBI
Target Description Y69A2AR.T /REP_DB=WormBase Gene ID /WP=CE26567 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067817
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y69A2AR.15 ENSEMBL cdna:known chromosome:CEL140:IV:2542323:2548716:1 gene:Y69A2AR.15 None
NM_067817 NCBI Caenorhabditis elegans Y69A2AR.15 (Y69A2AR.15) mRNA, complete cds. None
GENEFINDER00000018852 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2542323:2549186:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2542328-2550148(+) 96.79 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.15
Entrez Gene 190541 Entrez gene
SwissProt Q95XI5 EMBL-EBI
WormBase CE39064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500218 Y69A2AR.15 [Caenorhabditis elegans] 0.0
blast AAK68559 Hypothetical protein Y69A2AR.15 [Caenorhabditis elegans] 0.0
blast CAE65549 Hypothetical protein CBG10533 [Caenorhabditis briggsae] 1.0E-176
blast CAE65549 Hypothetical protein CBG10533 [Caenorhabditis briggsae] 1.0E-169
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500218.1 8 53-75,96-118,144-166,187-209,219-241,248-270,294-316,337-359
Y69A2AR.15 8 53-75,96-118,144-166,187-209,219-241,248-270,294-316,337-359
GENEFINDER00000018852 8 53-75,96-118,144-166,187-209,219-241,248-270,294-316,337-359
Sequence
Target Sequence 
>C. ELEGANS:176199_AT
atatcaccacaatatctctacatcccatatcatttgcgatttatatgttcatgtcgagga
aatttcgagtttcaatgagaaggttgttaggttggcgatttcttgcatccgacgaagaat
ttaatgcattcacatcatccaccagaatccacacggcacatccaaaaatgactctaatgg
agaaggaaagcataggcagcagtgggaaaggtactccatcagtcggacaaaaacgtggaa
tgtccgtcgattttaagatttcgtttgacgttgagccccaacgtcgtcgccgagcaacca
ccgccgacacgaatcatcaaaatcatgcaccgatctccatgtcaaatgcaaatcaccgcc
ggcacaattctaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCACCACAATATCTCTACATCC 623 19 1040 Antisense
TCTCTACATCCCATATCATTTGCGA 185 613 1054 Antisense
TAGGTTGGCGATTTCTTGCATCCGA 636 653 1127 Antisense
TAATGCATTCACATCATCCACCAGA 457 635 1161 Antisense
GAATCCACACGGCACATCCAAAAAT 282 329 1184 Antisense
ACGTGGAATGTCCGTCGATTTTAAG 391 95 1272 Antisense
AGATTTCGTTTGACGTTGAGCCCCA 66 65 1295 Antisense
CACCGCCGACACGAATCATCAAAAT 438 201 1338 Antisense
ATCATGCACCGATCTCCATGTCAAA 255 29 1361 Antisense
ATGTCAAATGCAAATCACCGCCGGC 391 47 1378 Antisense
ATCACCGCCGGCACAATTCTAAATT 63 27 1391 Antisense
Sequence Source Affymetrix Proprietary Database