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[176197_at]

Description Y75B7AL.C /REP_DB=WormBase Gene ID /WP=CE26303 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 13      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 81.8
(-0.7)
A 		59.4
(-1.6)
A 		25.9
(-3)
A 		169.9
(3)
A 		144
B 51.8
(-0.8)
A 		23.4
(-3)
A 		37.6
(-1.9)
A 		101.9
(3)
A 		79
C 80.3
(-0.5)
A 		108.5
(1)
A 		35.6
(-3)
A 		144.1
(3)
A 		109
avr 71.3
(-0.8) 		63.8
(-1.3) 		33
(-3) 		138.6
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 101.8
(3)
A 		89.2
(2.1)
A 		74.7
(1)
A 		60.2
(-0.1)
A 		83.8
(1.7)
A 		20.8
(-3)
A 		81
B 94.7
(1.4)
A 		123.6
(3)
A 		57.9
(-0.7)
A 		81.3
(0.6)
A 		40.8
(-1.7)
A 		16.8
(-3)
A 		107
C 86.4
(0.6)
A 		132.2
(3)
A 		111.9
(1.9)
A 		114.8
(2.1)
A 		17.1
(-3)
A 		30.3
(-2.3)
A 		115
avr 94.3
(1.7) 		115
(3) 		81.5
(0.8) 		85.4
(1.1) 		47.2
(-1.4) 		22.6
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 29.8
(3)
A 		12.9
(-1.4)
A 		6.8
(-3)
A 		24.9
(1.7)
A 		23
B 16.5
(1)
A 		5.8
(-3)
A 		8.7
(-1.9)
A 		21.7
(3)
A 		16
C 26.6
(1.5)
A 		31.2
(3)
A 		12.4
(-3)
A 		24.3
(0.8)
A 		19
avr 24.3
(3) 		16.6
(-0.1) 		9.3
(-3) 		23.6
(2.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 18.8
(0.1)
A 		31.7
(3)
A 		16.3
(-0.5)
A 		15.3
(-0.7)
A 		25.3
(1.6)
A 		5.1
(-3)
A 		27
B 32.9
(1.6)
A 		41.1
(3)
A 		14.1
(-1.7)
A 		21.5
(-0.4)
A 		16.6
(-1.2)
A 		6.3
(-3)
A 		35
C 32
(1.6)
A 		40.3
(3)
A 		28.5
(1)
A 		23.1
(0)
A 		5.5
(-3)
A 		10.1
(-2.2)
A 		35
avr 27.9
(1.1) 		37.7
(3) 		19.6
(-0.6) 		20
(-0.5) 		15.8
(-1.3) 		7.2
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19521
Sequence Type Exemplar sequence
Representative Public ID Y75B7AL.C NCBI
Target Description Y75B7AL.C /REP_DB=WormBase Gene ID /WP=CE26303 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071003 NCBI Caenorhabditis elegans Y75B7AL.2 (Y75B7AL.2) mRNA, complete cds. 11/11 None
SNAP00000018274 ENSEMBL cdna:SNAP chromosome:CEL140:V:1332356:1334307:-1 11/11 None
GENEFINDER00000018286 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1328485:1335764:-1 11/11 None
Y75B7AL.2 ENSEMBL cdna:known chromosome:CEL140:V:1332271:1333947:-1 gene:Y75B7AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1332270-1333947(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B7AL.2
Entrez Gene 190697 Entrez gene
SwissProt Q965S7 EMBL-EBI
WormBase CE26303 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68604 Hypothetical protein Y75B7AL.2 [Caenorhabditis elegans] ref|NP_503404.1| Y75B7AL.2 [Caenorhabditis elegans] 1.0E-136
blast AAK68604 Hypothetical protein Y75B7AL.2 [Caenorhabditis elegans] ref|NP_503404.1| Y75B7AL.2 [Caenorhabditis elegans] 1.0E-121
blast CAE62346 Hypothetical protein CBG06422 [Caenorhabditis briggsae] 1.0E-75
blast CAE62346 Hypothetical protein CBG06422 [Caenorhabditis briggsae] 9.0E-57
blast CAE62346 Hypothetical protein CBG06422 [Caenorhabditis briggsae] 3.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503404.1 1 98-120
Y75B7AL.2 1 98-120
SNAP00000018274 1 145-167
GENEFINDER00000018286 1 250-272
Sequence
Target Sequence 
>C. ELEGANS:176197_AT
gttcatctcataatgtgccgtttgatgaagactttcataaaaccgcgtcctctcgaattc
tggaaagactgacagttacgaagaaaacgaaccgcctccagacagtgttcaaagccacta
tattttcctcgaaaattgacagaactattcaaactttgtccaaagtggtggcttgcttaa
tttatttttcaattttggcagctttagtaggaatgtacgcatatcaaaatgtggagttga
gggtctctagacaaaatcccttcactccaatagtcaaatatcgaagacaggctgatgacg
tggcaattgaaatggaagaagctatggaagatattcaatcagattcgaccttggaaggag
acacccaaatgttgatttctagtgttgaaaccccagaaattgccaattcagaagacattg
aggatttgcgtaatgttaatccaaattttgaactggatcacattgaagaggatggtggca
ttgtggctggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCATCTCATAATGTGCCGTTTGA 196 445 149 Antisense
AGACTTTCATAAAACCGCGTCCTCT 247 69 177 Antisense
GCGTCCTCTCGAATTCTGGAAAGAC 109 293 193 Antisense
TACGAAGAAAACGAACCGCCTCCAG 228 649 225 Antisense
CGCCTCCAGACAGTGTTCAAAGCCA 634 255 241 Antisense
TCAAAGCCACTATATTTTCCTCGAA 597 627 257 Antisense
GGTGGCTTGCTTAATTTATTTTTCA 478 499 315 Antisense
GGGTCTCTAGACAAAATCCCTTCAC 190 497 389 Antisense
AAATCCCTTCACTCCAATAGTCAAA 578 89 402 Antisense
GAAACCCCAGAAATTGCCAATTCAG 546 357 535 Antisense
GAGGATGGTGGCATTGTGGCTGGAG 656 403 616 Antisense
Sequence Source Affymetrix Proprietary Database