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[176196_at]

Description Y82E9BL.N /REP_DB=WormBase Gene ID /WP=CE23438 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 72      4grp_total > 08      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 11.5
(-2)
A 		4.6
(-2.8)
A 		2.7
(-3)
A 		55.6
(3)
A 		53
B 9.1
(-3)
A 		17.1
(-1.4)
A 		28
(0.9)
A 		38.4
(3)
A 		29
C 9.2
(-3)
A 		12.8
(-2.6)
A 		20.2
(-1.7)
M 		60.5
(3)
P 		51
avr 9.9
(-3) 		11.5
(-2.8) 		17
(-2) 		51.5
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 22.7
(-3)
A 		40.2
(-1.9)
P 		115.1
(2.8)
P 		119
(3)
P 		87.6
(1)
P 		44.3
(-1.7)
A 		96
B 18.4
(-3)
A 		47.6
(-1.2)
P 		102.2
(2.2)
P 		116
(3)
P 		97.6
(1.9)
P 		48.5
(-1.1)
P 		98
C 3.2
(-3)
A 		45.1
(-1)
P 		93.7
(1.4)
P 		127.8
(3)
P 		71.4
(0.3)
P 		36.1
(-1.4)
P 		125
avr 14.8
(-3) 		44.3
(-1.3) 		103.7
(2) 		120.9
(3) 		85.5
(1) 		43
(-1.4) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.2
(-0.2)
A 		1
(-2.8)
A 		0.7
(-3)
A 		8.1
(3)
A 		7
B 2.9
(-3)
A 		4.2
(-1.5)
A 		6.5
(1.1)
A 		8.2
(3)
A 		5
C 3.1
(-3)
A 		3.7
(-2.5)
A 		7.1
(0.4)
M 		10.2
(3)
P 		7
avr 3.4
(-2.6) 		3
(-3) 		4.8
(-1.1) 		8.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.2
(-3)
A 		14.3
(-0.7)
P 		25.1
(1.8)
P 		30.2
(3)
P 		26.4
(2.1)
P 		10.8
(-1.5)
A 		26
B 6.4
(-3)
A 		15.9
(-1.3)
P 		24.8
(0.3)
P 		30.7
(1.4)
P 		39.7
(3)
P 		18.1
(-0.9)
P 		33
C 1.2
(-3)
A 		13.8
(0.1)
P 		23.9
(2.6)
P 		25.7
(3)
P 		23.1
(2.4)
P 		12.1
(-0.3)
P 		25
avr 3.9
(-3) 		14.7
(-0.5) 		24.6
(1.8) 		28.9
(2.8) 		29.7
(3) 		13.7
(-0.7) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19086
Sequence Type Exemplar sequence
Representative Public ID Y82E9BL.N NCBI
Target Description Y82E9BL.N /REP_DB=WormBase Gene ID /WP=CE23438 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064986 NCBI Caenorhabditis elegans Y82E9BL.17 (Y82E9BL.17) mRNA, complete cds. 11/11 None
GENEFINDER00000041781 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1342986:1344682:1 11/11 None
Y82E9BL.17 ENSEMBL cdna:known chromosome:CEL140:III:1342986:1344682:1 gene:Y82E9BL.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041772 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1342774-1344682(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y82E9BL.17
Entrez Gene 190764 Entrez gene
WormBase CE27545 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK66039 Hypothetical protein Y82E9BL.17 [Caenorhabditis elegans] 1.0E-168
blast NP_497387 Y82E9BL.17 [Caenorhabditis elegans] 1.0E-164
blast AAK66039 Hypothetical protein Y82E9BL.17 [Caenorhabditis elegans] 1.0E-162
blast NP_497387 Y82E9BL.17 [Caenorhabditis elegans] 1.0E-162
blast AAK66034 Hypothetical protein Y82E9BL.7 [Caenorhabditis elegans] 1.0E-107
blast AAK66034 Hypothetical protein Y82E9BL.7 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.6E-52
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.4E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.6E-52
Sequence
Target Sequence 
>C. ELEGANS:176196_AT
ttgcgttacgcatcggaattgaaaatatctgctcctcacaaatgctacaccaataagaat
ttaaaacttcttctgaaaacttggaaagccaagaaatggaatcatgttaagaaattagaa
ttttcgagagtacaccttgatttcatactttctatatttccacacttcaattcccaaggg
ctggaaagtataacaatgcggaatatttacttagatgatcaatttgaacaaatcactcaa
ttggatcaatggaaaaacacgaaaaatttctgttttgataattatgagctagaatgccca
cccttcgaacacctgtttcacttccaaacgtttgaaattcacatactcaacttttcaata
gaaaatgctattcaattcagagatgacctactaaagagaaagacatttgaaagttgcaca
gtacggtttggtggtacaactgaatttattactggacttattcaaactgaagttgcaaga
gtattcaagtcggattatgtatattcttccgaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCGTTACGCATCGGAATTGAAAA 402 591 469 Antisense
GAAAATATCTGCTCCTCACAAATGC 222 353 489 Antisense
TGCTCCTCACAAATGCTACACCAAT 24 583 498 Antisense
GAATTTTCGAGAGTACACCTTGATT 310 325 586 Antisense
GAGTACACCTTGATTTCATACTTTC 611 399 596 Antisense
CATACTTTCTATATTTCCACACTTC 48 215 612 Antisense
AATTCACATACTCAACTTTTCAATA 605 173 804 Antisense
TGAAAGTTGCACAGTACGGTTTGGT 128 573 876 Antisense
TACGGTTTGGTGGTACAACTGAATT 185 625 890 Antisense
TTATTACTGGACTTATTCAAACTGA 294 675 914 Antisense
GGATTATGTATATTCTTCCGAGGAA 217 509 960 Antisense
Sequence Source Affymetrix Proprietary Database