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[176195_at]

Description Y75B7AL.B /REP_DB=WormBase Gene ID /WP=CE26302 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 40      4grp_total > 11      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 93.5
(-1.6)
P 		111.5
(-1)
A 		48.2
(-3)
A 		240.7
(3)
P 		193
B 77.3
(1.3)
P 		77.6
(1.3)
M 		47.4
(-3)
A 		89.6
(3)
P 		42
C 68.5
(-1.2)
P 		15.7
(-3)
A 		46.6
(-1.9)
M 		191.8
(3)
P 		176
avr 79.8
(-1.5) 		68.3
(-2) 		47.4
(-3) 		174
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 73.7
(1.4)
A 		56.5
(-0.2)
P 		91.1
(3)
M 		63.5
(0.5)
P 		67.5
(0.8)
P 		25.5
(-3)
A 		66
B 44
(-2.9)
P 		75.8
(3)
P 		75.1
(2.9)
A 		57.5
(-0.4)
A 		43.3
(-3)
P 		69.2
(1.8)
A 		33
C 80.1
(2)
A 		87.2
(2.7)
P 		44.6
(-1.9)
A 		89.6
(3)
A 		34.5
(-3)
A 		37.2
(-2.7)
M 		55
avr 65.9
(1.5) 		73.2
(3) 		70.3
(2.4) 		70.2
(2.4) 		48.4
(-2.1) 		44
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 34
(2.7)
P 		24.2
(0.1)
A 		12.6
(-3)
A 		35.2
(3)
P 		23
B 24.7
(3)
P 		19.2
(0.6)
M 		11
(-3)
A 		19.1
(0.5)
P 		14
C 22.7
(0.9)
P 		4.5
(-3)
A 		16.2
(-0.5)
M 		32.3
(3)
P 		28
avr 27.1
(2.3) 		16
(-2) 		13.3
(-3) 		28.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.6
(0.1)
A 		20.1
(2.9)
P 		19.8
(2.7)
M 		16.1
(1.2)
P 		20.4
(3)
P 		6.2
(-3)
A 		14
B 15.3
(-2.9)
P 		25.2
(2.7)
P 		18.2
(-1.3)
A 		15.2
(-3)
A 		17.6
(-1.6)
P 		25.8
(3)
A 		11
C 29.7
(3)
A 		26.6
(2)
P 		11.4
(-2.9)
A 		18
(-0.8)
A 		11.2
(-3)
A 		12.5
(-2.6)
M 		19
avr 19.5
(0.1) 		24
(3) 		16.5
(-1.9) 		16.4
(-2) 		16.4
(-2) 		14.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19529
Sequence Type Exemplar sequence
Representative Public ID Y75B7AL.B NCBI
Target Description Y75B7AL.B /REP_DB=WormBase Gene ID /WP=CE26302 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071005 NCBI Caenorhabditis elegans SyNapTotagmin family member (snt-3) (snt-3) mRNA, complete cds. 11/11 None
Y75B7AL.3 ENSEMBL cdna:known chromosome:CEL140:V:1357344:1361139:-1 gene:Y75B7AL.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018277 5/11 Cross Hyb Matching Probes None
SNAP00000018278 4/11 Cross Hyb Matching Probes None
GENEFINDER00000018281 5/11 Cross Hyb Matching Probes None
GENEFINDER00000018282 2/11 Cross Hyb Matching Probes None
GENEFINDER00000018285 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1357343-1361139(-) 95.98 100.0
Public Domain and Genome References
Gene Title
Gene Symbol snt-3
Ensembl Y75B7AL.3
Entrez Gene 190698 Entrez gene
SwissProt Q965S5 EMBL-EBI
WormBase CE26302 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8021 synaptic vesicle inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68605 Synaptotagmin protein 3 [Caenorhabditis elegans] ref|NP_503406.1| SyNapTotagmin family member (snt-3) [Caenorhabditis elegans] 0.0
blast CAE62349 Hypothetical protein CBG06425 [Caenorhabditis briggsae] 1.0E-112
blast BAA85622.1 Djsyt protein [Dugesia japonica] 8.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 1.2E-38
Pfam IPR000008 EMBL-EBI C2 domain 7.7E-35
Sequence
Target Sequence 
>C. ELEGANS:176195_AT
ggacgtgcttggcttatcagatccgtatgtcaagatatatttgatgatgggcactaaacg
actggagaagaaaaagacgacaatcaagatgaagacgttgaatccgtattataacgaatc
attcagttttgatgttacttcggaaaaaatgcagcgagtccaccttcatgtgacggtatc
cgattacgatagagttggttccaatgaacgaattggacagcacgcaatggaaaacctaat
agtacttttttgtgttggaacggccactggaaatcatttcacatttaatgctcccagtga
aataagtaatgctaataactgggagcatgaagaaattccgtgcattggagatcaaattcg
gttcgacgacacaatgccagtagtagcttttttggatcacaatgtggaatcgatagttct
accaaaaaatggattactagtttttactgacaatggtgtcgatttgggcggaactgctaa
ttggcaatgtgccaaaaacgatttggaaaagccaaaaggtaaacgtgagatcatggggtg
tgcggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGTGCTTGGCTTATCAGATCCG 51 525 531 Antisense
GATGATGGGCACTAAACGACTGGAG 413 411 573 Antisense
AAAAAATGCAGCGAGTCCACCTTCA 633 129 674 Antisense
GTCCACCTTCATGTGACGGTATCCG 363 473 688 Antisense
TGGACAGCACGCAATGGAAAACCTA 438 547 744 Antisense
GTGTTGGAACGGCCACTGGAAATCA 312 485 782 Antisense
CATTTCACATTTAATGCTCCCAGTG 566 215 805 Antisense
TCGGTTCGACGACACAATGCCAGTA 22 605 888 Antisense
GGTGTCGATTTGGGCGGAACTGCTA 624 497 985 Antisense
GGAACTGCTAATTGGCAATGTGCCA 26 531 1000 Antisense
ACGTGAGATCATGGGGTGTGCGGGA 280 93 1053 Antisense
Sequence Source Affymetrix Proprietary Database