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[176193_at]

Description C30A5.10 /REP_DB=WormBase Gene ID /WP=CE24816 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 3.4
(-3)
A 		46.5
(1.4)
A 		61.8
(3)
A 		3.5
(-3)
A 		58
B 12.6
(-2.1)
A 		49.5
(3)
A 		31.6
(0.5)
A 		6.3
(-3)
A 		43
C 30.9
(-3)
A 		74.2
(2.2)
A 		47.8
(-1)
A 		80.9
(3)
A 		50
avr 15.6
(-3) 		56.7
(3) 		47.1
(1.6) 		30.2
(-0.9) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 15.1
(-2)
A 		64.5
(3)
M 		21.5
(-1.4)
A 		29.1
(-0.6)
A 		5.5
(-3)
A 		47.7
(1.3)
A 		59
B 24.9
(-1.1)
A 		19.9
(-2.5)
A 		39.5
(3)
A 		18
(-3)
A 		31.9
(0.9)
A 		19.9
(-2.5)
A 		22
C 53
(3)
A 		51.7
(2.8)
A 		41.3
(1.6)
A 		21.6
(-0.7)
A 		20.9
(-0.8)
A 		2.5
(-3)
A 		51
avr 31
(-0.3) 		45.4
(3) 		34.1
(0.4) 		22.9
(-2.2) 		19.4
(-3) 		23.4
(-2.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.3
(-2.7)
A 		10.1
(0.7)
A 		16.2
(3)
A 		0.5
(-3)
A 		16
B 4
(-1.5)
A 		12.2
(3)
A 		7.3
(0.3)
A 		1.3
(-3)
A 		11
C 10.2
(-3)
A 		21.3
(3)
A 		16.6
(0.5)
A 		13.6
(-1.2)
A 		11
avr 5.2
(-2.9) 		14.5
(3) 		13.4
(2.3) 		5.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.8
(-2.7)
A 		22.9
(3)
M 		4.7
(-2.1)
A 		7.4
(-1.4)
A 		1.6
(-3)
A 		11.6
(-0.2)
A 		21
B 8.7
(-0.1)
A 		6.6
(-1.7)
A 		9.6
(0.5)
A 		4.8
(-3)
A 		13
(3)
A 		7.4
(-1.1)
A 		8
C 19.6
(3)
A 		15.8
(1.8)
A 		10.5
(0.1)
A 		4.3
(-1.9)
A 		6.8
(-1.1)
A 		0.8
(-3)
A 		19
avr 10.4
(0.1) 		15.1
(3) 		8.3
(-1.3) 		5.5
(-3) 		7.1
(-2) 		6.6
(-2.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8084
Sequence Type Exemplar sequence
Representative Public ID C30A5.10 NCBI
Target Description C30A5.10 /REP_DB=WormBase Gene ID /WP=CE24816 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066392(9), NM_066393(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066392 NCBI Caenorhabditis elegans C30A5.10a (C30A5.10) mRNA, complete cds. 9/11 None
NM_066393 NCBI Caenorhabditis elegans C30A5.10b (C30A5.10) mRNA, complete cds. 9/11 None
SNAP00000019637 ENSEMBL cdna:SNAP chromosome:CEL140:III:8205253:8209762:-1 11/11 None
GENEFINDER00000019647 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8205253:8209762:-1 11/11 None
C30A5.10a ENSEMBL cdna:known chromosome:CEL140:III:8207375:8208709:-1 gene:C30A5.10 9/11 None
C30A5.10b ENSEMBL cdna:known chromosome:CEL140:III:8207436:8208758:-1 gene:C30A5.10 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8208017-8209495(-) 100.0 100.0
Public Domain and Genome References
Ensembl C30A5.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02453 Hypothetical protein C30A5.6 [Caenorhabditis elegans] ref|NP_498792.1| C30A5.6 [Caenorhabditis elegans] sp|P34352|YK86_CAEEL Hypothetical protein C30A5.6 in chromosome III 0.0
blast AAL02451 Hypothetical protein C30A5.10a [Caenorhabditis elegans] ref|NP_498793.1| C30A5.10a [Caenorhabditis elegans] 1.0E-167
blast CAE70190 Hypothetical protein CBG16664 [Caenorhabditis briggsae] 1.0E-166
blast AAL02453 Hypothetical protein C30A5.6 [Caenorhabditis elegans] ref|NP_498792.1| C30A5.6 [Caenorhabditis elegans] sp|P34352|YK86_CAEEL Hypothetical protein C30A5.6 in chromosome III 1.0E-160
blast AAL02451 Hypothetical protein C30A5.10a [Caenorhabditis elegans] ref|NP_498793.1| C30A5.10a [Caenorhabditis elegans] 1.0E-151
blast CAE70190 Hypothetical protein CBG16664 [Caenorhabditis briggsae] 1.0E-145
blast CAE70189 Hypothetical protein CBG16663 [Caenorhabditis briggsae] 1.0E-142
blast AAL02451 Hypothetical protein C30A5.10a [Caenorhabditis elegans] ref|NP_498793.1| C30A5.10a [Caenorhabditis elegans] 1.0E-126
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000019637 5 667-689,696-718,728-750,793-815,825-847
GENEFINDER00000019647 3 659-681,709-731,741-763
Sequence
Target Sequence 
>C. ELEGANS:176193_AT
caactacctcaactacaactatgccaccaacttatcaaactacaacaaaatctgtcaaaa
agaacacagaaacattatggacaacatcgaagtctccaatgaagttgtcgaagaatccaa
aaccatcgaaattgaatcaaaaataaacgaatcaaatcttcttaaagaaattggtgtaga
tattggagcaattattgttgattcatgttcaacggatcttcgttcagttgctgatcttta
tgaacttttatcggggacaaatattcaaaaaagtgatcttattgcaattattcgagatga
ttcaacatttatgccaaatactgaacagattataagacagctcaatttaccagttgtcaa
cacatttttcacaacgagatcggcggtgcaaacatctggaactttgccatcaatgtttct
cccaattcaatcaattatatcagcacttcgtcattaccagagtacttgtgttaacattat
ttttgatgaaaaatattcagaatccgtaagtgagttccagcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTACCTCAACTACAACTATGCC 120 189 123 Antisense
CAACTATGCCACCAACTTATCAAAC 706 187 138 Antisense
TGATTCATGTTCAACGGATCTTCGT 472 561 321 Antisense
GGATCTTCGTTCAGTTGCTGATCTT 660 511 336 Antisense
TAAGACAGCTCAATTTACCAGTTGT 257 637 455 Antisense
CACATTTTTCACAACGAGATCGGCG 402 195 483 Antisense
ATCGGCGGTGCAAACATCTGGAACT 287 35 501 Antisense
GGAACTTTGCCATCAATGTTTCTCC 630 529 520 Antisense
AATGTTTCTCCCAATTCAATCAATT 569 163 534 Antisense
TATATCAGCACTTCGTCATTACCAG 87 657 558 Antisense
AATCCGTAAGTGAGTTCCAGCAAGT 78 163 623 Antisense
Sequence Source Affymetrix Proprietary Database