[Home] | [Total List]

[176191_at]

Description Y71H2AM.P /REP_DB=WormBase Gene ID /WP=CE26270 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 86      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 58.6
(-0.6)
A 		30.7
(-1.9)
A 		9.3
(-3)
A 		131.2
(3)
A 		122
B 12.7
(-1.1)
A 		14
(-0.6)
A 		7.1
(-3)
A 		24.6
(3)
A 		18
C 40.7
(-2.7)
A 		51.4
(-2.2)
A 		33.5
(-3)
A 		165.1
(3)
A 		132
avr 37.3
(-1.6) 		32
(-2) 		16.6
(-3) 		107
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 23.1
(-2.5)
A 		11
(-3)
A 		103.1
(1.1)
A 		74.1
(-0.2)
A 		95
(0.7)
A 		146.2
(3)
A 		135
B 20.8
(-3)
A 		42
(-1.7)
A 		52.8
(-1)
A 		106
(2.4)
A 		115.6
(3)
M 		112
(2.8)
A 		95
C 13.3
(-3)
A 		90
(0.4)
A 		62.4
(-0.8)
A 		64.8
(-0.7)
A 		68.8
(-0.6)
A 		149.4
(3)
P 		136
avr 19.1
(-3) 		47.7
(-1.5) 		72.8
(-0.2) 		81.6
(0.2) 		93.1
(0.8) 		135.9
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 21.3
(3)
A 		6.7
(-1.6)
A 		2.4
(-3)
A 		19.2
(2.3)
A 		19
B 4.1
(1.2)
A 		3.5
(0.2)
A 		1.6
(-3)
A 		5.2
(3)
A 		4
C 13.5
(-2.3)
A 		14.8
(-1.8)
A 		11.7
(-3)
A 		27.8
(3)
A 		16
avr 13
(0.8) 		8.3
(-1.5) 		5.2
(-3) 		17.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 4.3
(-2.9)
A 		3.9
(-3)
A 		22.5
(0.5)
A 		18.8
(-0.2)
A 		28.7
(1.7)
A 		35.6
(3)
A 		32
B 7.3
(-3)
A 		14
(-2)
A 		12.8
(-2.2)
A 		28.1
(0.1)
A 		47
(3)
M 		41.8
(2.2)
A 		40
C 4.9
(-3)
A 		27.5
(0)
A 		15.9
(-1.5)
A 		13
(-1.9)
A 		22.3
(-0.7)
A 		50
(3)
P 		45
avr 5.5
(-3) 		15.1
(-1.4) 		17.1
(-1.1) 		20
(-0.6) 		32.7
(1.4) 		42.5
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18910
Sequence Type Exemplar sequence
Representative Public ID Y71H2AM.P NCBI
Target Description Y71H2AM.P /REP_DB=WormBase Gene ID /WP=CE26270 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065206
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71H2AM.7 ENSEMBL cdna:known chromosome:CEL140:III:2726560:2731523:1 gene:Y71H2AM.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065206 8/11 Cross Hyb Matching Probes None
SNAP00000014436 7/11 Cross Hyb Matching Probes None
GENEFINDER00000014482 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2726559-2731523(+) 76.58 100.0
Public Domain and Genome References
Ensembl Y71H2AM.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29972 Hypothetical protein Y71H2AM.7 [Caenorhabditis elegans] ref|NP_497607.2| Y71H2AM.7 [Caenorhabditis elegans] 3.0E-55
blast CAE65003 Hypothetical protein CBG09841 [Caenorhabditis briggsae] 6.0E-40
blast AAK29977 Hypothetical protein Y71H2AM.2 [Caenorhabditis elegans] ref|NP_497624.1| Y71H2AM.2 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
Y71H2AM.7 2 201-223,265-287
Sequence
Target Sequence 
>C. ELEGANS:176191_AT
gaaagtgtccggcgatttgtagaacggaggaaaggcatggtttttcactgcaactttttc
ctcacgggggacgaggaaaagtggtttctaggccatggcagaggggccgacaagttttaa
cgaccatttatcttgctttgttttccgcctgttttctttcgttttttatcgatttttttc
gttttttcttaataaaactgataaataaatactttttgcagatgctaaaacaatttccaa
gtaaaaaaatcatgtattcagtgggcaagcagcgattaaacatctcaaaattcaaatggg
atatccaattgctcgccgccgcaaccgtccaaactgcttacattctacttctcggcactt
ctcaaattgccaatgtttcagtgataatcaataatttattgagatgtgacaatgcttatg
tcgaaccattaaagcaatcgattatagagctcgcctgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTGTCCGGCGATTTGTAGAAC 652 359 488 Antisense
AAGGCATGGTTTTTCACTGCAACTT 195 161 519 Antisense
GTTTTAACGACCATTTATCTTGCTT 664 447 601 Antisense
GGGCAAGCAGCGATTAAACATCTCA 445 493 750 Antisense
AAATGGGATATCCAATTGCTCGCCG 372 121 781 Antisense
GCAACCGTCCAAACTGCTTACATTC 438 319 808 Antisense
CAAACTGCTTACATTCTACTTCTCG 73 193 817 Antisense
TACTTCTCGGCACTTCTCAAATTGC 469 645 833 Antisense
AATTGCCAATGTTTCAGTGATAATC 574 177 852 Antisense
GTGACAATGCTTATGTCGAACCATT 678 461 893 Antisense
AATCGATTATAGAGCTCGCCTGCGC 413 167 923 Antisense
Sequence Source Affymetrix Proprietary Database