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[176189_at]

Description Y92H12A.B /REP_DB=WormBase Gene ID /WP=CE26600 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 56      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 117.9
(3)
A 		69.7
(-3)
A 		75.9
(-2.2)
A 		70.2
(-2.9)
A 		48
B 109
(3)
A 		73.2
(-2)
A 		66.1
(-3)
A 		102.4
(2.1)
A 		43
C 102.3
(3)
A 		65.1
(-2.4)
A 		60.9
(-3)
A 		100.4
(2.7)
A 		41
avr 109.7
(3) 		69.3
(-2.8) 		67.6
(-3) 		91
(0.3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 5.9
(-3)
A 		61
(0.8)
A 		47.8
(-0.1)
A 		60
(0.7)
A 		48.9
(-0)
A 		93
(3)
A 		87
B 57.9
(0.7)
A 		68.4
(2.1)
A 		58
(0.7)
A 		30.4
(-3)
A 		31.8
(-2.8)
A 		74.9
(3)
A 		45
C 31.6
(0)
A 		47
(2)
A 		55.4
(3)
A 		34.6
(0.4)
A 		7.1
(-3)
A 		50.1
(2.3)
A 		48
avr 31.8
(-2.7) 		58.8
(1.1) 		53.7
(0.4) 		41.7
(-1.3) 		29.3
(-3) 		72.7
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 42.9
(3)
A 		15.1
(-2.1)
A 		19.9
(-1.2)
A 		10.3
(-3)
A 		33
B 34.8
(3)
A 		18.1
(-2.1)
A 		15.3
(-3)
A 		21.8
(-1)
A 		20
C 33.9
(3)
A 		18.7
(-2.4)
A 		21.2
(-1.5)
A 		16.9
(-3)
A 		17
avr 37.2
(3) 		17.3
(-2.7) 		18.8
(-2.3) 		16.3
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.1
(-3)
A 		21.7
(2.7)
A 		10.4
(-0.4)
A 		15.2
(0.9)
A 		14.7
(0.8)
A 		22.6
(3)
A 		22
B 20.2
(0.7)
A 		22.8
(1.5)
A 		14.1
(-1.2)
A 		8
(-3)
A 		12.9
(-1.5)
A 		27.9
(3)
A 		20
C 11.7
(0.9)
A 		14.3
(2)
A 		14.1
(1.9)
A 		7
(-1.1)
A 		2.3
(-3)
A 		16.8
(3)
A 		15
avr 11
(-2.5) 		19.6
(1.6) 		12.9
(-1.6) 		10.1
(-3) 		10
(-3) 		22.4
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18719
Sequence Type Exemplar sequence
Representative Public ID Y92H12A.B NCBI
Target Description Y92H12A.B /REP_DB=WormBase Gene ID /WP=CE26600 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058460(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058460 NCBI Caenorhabditis elegans Y92H12A.5 (Y92H12A.5) mRNA, complete cds. 10/11 None
SNAP00000039118 ENSEMBL cdna:SNAP chromosome:CEL140:I:1491360:1514410:-1 10/11 None
GENEFINDER00000039129 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1493957:1514410:-1 11/11 None
Y92H12A.5 ENSEMBL cdna:known chromosome:CEL140:I:1494660:1504891:-1 gene:Y92H12A.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1494246-1504891(-) 93.14 100.0
Public Domain and Genome References
Gene Title
Ensembl Y92H12A.5
Entrez Gene 171716 Entrez gene
SwissProt Q9BKW8 EMBL-EBI
WormBase CE36767 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29733 Hypothetical protein Y92H12A.5 [Caenorhabditis elegans] ref|NP_490861.2| Y92H12A.5 [Caenorhabditis elegans] 0.0
blast CAE74527 Hypothetical protein CBG22281 [Caenorhabditis briggsae] 0.0
blast AAK29734 Hypothetical protein Y92H12A.6 [Caenorhabditis elegans] ref|NP_490862.2| Y92H12A.6 [Caenorhabditis elegans] 1.0E-180
Sequence
Target Sequence 
>C. ELEGANS:176189_AT
tggaaattctcacgtcagcaatcggaaatttcatgagcacagagagcttgcaaaaagtcg
aagagctcatcgaggcacgtctcgaagatccgaatctcaattggacgctaccatcaacca
tagcttacgcgacaaaattgcgatattcgaggcgggcgtgtgtagatcaggagcttatcg
cctggattcgtgaatgttatgagcaggatgaccccgaaacgaaacaaatcgcattggaag
ttggcgctcaatttgtgtgcagaatccgatctaaaagatcatatacagacgaggaaaagg
aactgattggagcagttgcattgtatttgcaagacgaatctgagcgtattcgtaataata
agcccaattttcaaattatcaaaaaaaccttgcgcgcaatttattatggggttattcatg
cgtgtcgcgatcactgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAATTCTCACGTCAGCAATCGG 83 547 2108 Antisense
CGAAGAGCTCATCGAGGCACGTCTC 277 253 2166 Antisense
GAGGCACGTCTCGAAGATCCGAATC 367 405 2179 Antisense
TCTCAATTGGACGCTACCATCAACC 114 611 2202 Antisense
ACCATCAACCATAGCTTACGCGACA 38 87 2217 Antisense
TTGCGATATTCGAGGCGGGCGTGTG 703 685 2245 Antisense
GCGGGCGTGTGTAGATCAGGAGCTT 283 293 2259 Antisense
GAGCTTATCGCCTGGATTCGTGAAT 32 385 2278 Antisense
GAGCAGGATGACCCCGAAACGAAAC 362 387 2308 Antisense
GTTGGCGCTCAATTTGTGTGCAGAA 661 435 2347 Antisense
TTCATGCGTGTCGCGATCACTGCAA 349 689 2522 Antisense
Sequence Source Affymetrix Proprietary Database