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[176188_at]

Description Y119D3B.L /REP_DB=WormBase Gene ID /WP=CE26488 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 02      4grp_total > 49      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 597
1 2 3 4 range
A 107.8
(-2.5)
A 		651.6
(3)
P 		515.3
(1.6)
P 		61.7
(-3)
A 		590
B 70.2
(-2.8)
A 		505.6
(3)
P 		465.9
(2.5)
P 		56.2
(-3)
A 		449
C 54.5
(-3)
A 		591
(3)
P 		509.1
(2.1)
P 		61.4
(-2.9)
A 		537
avr 77.5
(-2.8) 		582.7
(3) 		496.8
(2) 		59.8
(-3) 		523

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 206.5
(-0.7)
P 		405.2
(3)
P 		220.4
(-0.4)
P 		196.1
(-0.9)
P 		217
(-0.5)
P 		82.6
(-3)
A 		323
B 192.6
(-0.6)
P 		350.7
(3)
P 		146.2
(-1.7)
P 		229
(0.2)
P 		139.6
(-1.8)
P 		88
(-3)
A 		263
C 243.7
(0.8)
P 		353.8
(3)
P 		233.4
(0.6)
P 		176.6
(-0.6)
P 		235.2
(0.6)
P 		55.9
(-3)
A 		298
avr 214.3
(-0.2) 		369.9
(3) 		200
(-0.5) 		200.6
(-0.5) 		197.3
(-0.5) 		75.5
(-3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 39.3
(-1.6)
A 		141.4
(3)
P 		134.7
(2.7)
P 		9
(-3)
A 		132
B 22.4
(-2.4)
A 		124.9
(3)
P 		107.9
(2.1)
P 		12
(-3)
A 		113
C 18
(-2.7)
A 		169.9
(2.7)
P 		177.4
(3)
P 		10.3
(-3)
A 		167
avr 26.6
(-2.3) 		145.4
(3) 		140
(2.8) 		10.4
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 38.1
(-2.1)
P 		144.1
(3)
P 		48
(-1.7)
P 		49.7
(-1.6)
P 		65.5
(-0.8)
P 		20.1
(-3)
A 		124
B 67
(-0.6)
P 		116.7
(3)
P 		35.5
(-2.8)
P 		60.7
(-1)
P 		56.7
(-1.3)
P 		32.8
(-3)
A 		84
C 90.3
(1.8)
P 		108
(3)
P 		59.4
(-0.3)
P 		35.5
(-1.9)
P 		76.1
(0.9)
P 		18.7
(-3)
A 		89
avr 65.1
(-0.5) 		122.9
(3) 		47.6
(-1.6) 		48.6
(-1.5) 		66.1
(-0.4) 		23.9
(-3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19008
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.L NCBI
Target Description Y119D3B.L /REP_DB=WormBase Gene ID /WP=CE26488 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064939 NCBI Caenorhabditis elegans Y71D11A.1 (Y71D11A.1) mRNA, complete cds. 11/11 None
SNAP00000002014 ENSEMBL cdna:SNAP chromosome:CEL140:III:1177700:1212208:1 10/11 None
GENEFINDER00000002029 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1177700:1180899:1 11/11 None
Y71D11A.1 ENSEMBL cdna:known chromosome:CEL140:III:1152032:1180880:1 gene:Y71D11A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1177699-1180899(+) 99.79 99.79
Public Domain and Genome References
Gene Title
Ensembl Y71D11A.1
Entrez Gene 190583 Entrez gene
WormBase CE38125 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
7156 homophilic cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
30288 periplasmic space (sensu Gram-negative Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497340 Y71D11A.1 [Caenorhabditis elegans] 0.0
blast CAE66457 Hypothetical protein CBG11734 [Caenorhabditis briggsae] 0.0
blast ABA00154 Hypothetical protein Y71D11A.1 [Caenorhabditis elegans] 0.0
blast NP_497340 Y71D11A.1 [Caenorhabditis elegans] 1.0E-138
blast NP_497340 Y71D11A.1 [Caenorhabditis elegans] 1.0E-131
blast AAN84810 Hypothetical protein Y119D3B.12a [Caenorhabditis elegans] ref|NP_497348.2| Y119D3B.12a [Caenorhabditis elegans] 1.0E-127
blast CAE69121 Hypothetical protein CBG15147 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 8.1E-24
Pfam IPR004882 EMBL-EBI Protein of unknown function DUF259 1.8E-14
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 2.4E-68
Pfam IPR002126 EMBL-EBI Cadherin 6.8E-9
Pfam IPR002126 EMBL-EBI Cadherin 5.2E-5
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-21
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-6
Pfam IPR002126 EMBL-EBI Cadherin 1.3E-6
Pfam IPR002126 EMBL-EBI Cadherin 8.8E-14
Pfam IPR002126 EMBL-EBI Cadherin 2.5E-4
Pfam IPR002126 EMBL-EBI Cadherin 1.8E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497340.2 1 2774-2796
Y71D11A.1 1 2774-2796
SNAP00000002014 1 217-239
GENEFINDER00000002029 1 182-204
Sequence
Target Sequence 
>C. ELEGANS:176188_AT
ccagccatttgtatccgacgacggcaagactgacatgaagaagtcccacgtcttcgtcta
ctccctggacaatctgagccaaaagcctatctccagagatgagctcaaacggctcttgat
ggctcattccgatgggcttcatcccctgcaaatctcctcagtttcgcttttatcaacagg
aaatgcggctggaaatgggcaattcttgctgacagtcgtcctactggttgtgctcatcgc
tttgttgctcttcatttgtgcattgataatgtgttgtgccaaacgccgggcccgcaacac
cgctggagtcatggaaggcgcctacatgattaactctgtcggaagtggcccccggccgta
tgacgtggaaaatatttcacggctcaccgcacagaacgtactagccggtagacccttgcc
ggacccccaggagcatagaattgacatgtcatccaacgatacggatattgccttagaacg
tgacgatactactagagaattttcaaatagtgtccgagaacggccaactctgttgcaaag
tgcacttcagaggcagaatatccacccatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCCATTTGTATCCGACGACGGC 301 271 355 Antisense
TGAAGAAGTCCCACGTCTTCGTCTA 114 573 390 Antisense
TCTACTCCCTGGACAATCTGAGCCA 152 615 411 Antisense
AAACGGCTCTTGATGGCTCATTCCG 567 127 461 Antisense
TCTCCTCAGTTTCGCTTTTATCAAC 579 609 507 Antisense
GGCAATTCTTGCTGACAGTCGTCCT 3 535 552 Antisense
TCGCTTTGTTGCTCTTCATTTGTGC 182 601 591 Antisense
GGAAGGCGCCTACATGATTAACTCT 432 531 667 Antisense
GATTAACTCTGTCGGAAGTGGCCCC 636 395 682 Antisense
CTCACCGCACAGAACGTACTAGCCG 454 227 737 Antisense
CAGAGGCAGAATATCCACCCATCAA 5 207 902 Antisense
Sequence Source Affymetrix Proprietary Database