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[176187_at]

Description Y69A2AR.U /REP_DB=WormBase Gene ID /WP=CE26568 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 64      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 11.4
(-3)
A 		16.6
(0.3)
A 		21
(3)
A 		16.6
(0.3)
A 		10
B 10.3
(-3)
A 		15.6
(-1.2)
A 		14.4
(-1.6)
A 		28.3
(3)
A 		18
C 9.6
(-3)
A 		17.5
(-1.7)
A 		19.9
(-1.3)
A 		46.1
(3)
A 		37
avr 10.4
(-3) 		16.6
(-1.1) 		18.4
(-0.6) 		30.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 15.7
(-0.9)
A 		14.3
(-1.1)
A 		24.7
(0.5)
A 		10.4
(-1.7)
A 		1.8
(-3)
A 		40.8
(3)
A 		39
B 17.8
(-2.6)
A 		14.8
(-2.9)
A 		68.8
(3)
A 		13.8
(-3)
A 		37.8
(-0.4)
A 		61.8
(2.2)
A 		55
C 9.8
(-3)
A 		39.2
(-1.5)
A 		28.8
(-2)
A 		126.1
(3)
A 		13.2
(-2.8)
A 		26.7
(-2.1)
A 		116
avr 14.4
(-3) 		22.8
(-1.6) 		40.8
(1.4) 		50.1
(3) 		17.6
(-2.5) 		43.1
(1.8) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.1
(0.3)
A 		3.6
(-0.7)
A 		5.5
(3)
A 		2.4
(-3)
A 		3
B 3.3
(-3)
A 		3.9
(-1.7)
A 		3.3
(-3)
A 		6
(3)
A 		3
C 3.2
(-3)
A 		5
(-0.7)
A 		6.9
(1.8)
A 		7.8
(3)
A 		5
avr 3.5
(-3) 		4.2
(-0.8) 		5.2
(2.4) 		5.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.9
(-1.5)
A 		5.1
(-0.1)
A 		5.4
(0.1)
A 		2.6
(-1.7)
A 		0.6
(-3)
A 		9.9
(3)
A 		9
B 6.2
(-2.2)
A 		4.9
(-2.6)
A 		16.7
(1)
A 		3.6
(-3)
A 		15.4
(0.6)
A 		23.1
(3)
A 		20
C 3.6
(-3)
A 		12
(-0.7)
A 		7.3
(-2)
A 		25.4
(3)
A 		4.3
(-2.8)
A 		8.9
(-1.5)
A 		22
avr 4.2
(-3) 		7.3
(-1.1) 		9.8
(0.4) 		10.5
(0.9) 		6.8
(-1.4) 		14
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19195
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.U NCBI
Target Description Y69A2AR.U /REP_DB=WormBase Gene ID /WP=CE26568 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067819 NCBI Caenorhabditis elegans Y69A2AR.14 (Y69A2AR.14) mRNA, complete cds. 11/11 None
GENEFINDER00000018845 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2552730:2557103:1 11/11 None
Y69A2AR.14 ENSEMBL cdna:known chromosome:CEL140:IV:2552730:2557103:1 gene:Y69A2AR.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018808 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2552735-2557109(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.14
Entrez Gene 190540 Entrez gene
SwissProt Q95XI3 EMBL-EBI
WormBase CE26568 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68558 Hypothetical protein Y69A2AR.14 [Caenorhabditis elegans] ref|NP_500220.1| Y69A2AR.14 [Caenorhabditis elegans] 0.0
blast AAK68556 Hypothetical protein Y69A2AR.12 [Caenorhabditis elegans] ref|NP_500224.1| Y69A2AR.12 [Caenorhabditis elegans] 4.0E-30
blast AAF59585 Hypothetical protein Y54G2A.13 [Caenorhabditis elegans] ref|NP_500256.2| Y54G2A.13 [Caenorhabditis elegans] 7.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500220.1 1 361-383
Y69A2AR.14 1 361-383
GENEFINDER00000018845 1 361-383
Sequence
Target Sequence 
>C. ELEGANS:176187_AT
agctccagcagaatcatcttcaactgcaggaattattggaggagttgttgctttggtggt
ggtatgtgctcttgcagtgctcttcttcttctgctggagaaatcgtaagaaggagaagcc
gaaggtcgtcaggaaagcaccacttagagcacccatccgtcccagacagccgccgaatca
gaatatcaagcctattacgcctgcgactcccacaccatctcagccatcagaggaaaataa
ggctgcattggccaagcagattgaaatgatgaaaatccgggcccacatgagaaaggcaga
agagcggcacaagtgggacacgagaacctctaagttcaaaaaaaaaggagcaatctttat
cccgatggagccggacatcttgccagctggtccactccccaacgacatcgttctgaagaa
agtggagtatgatccatccggcaatgagatgtttgatattggatccgatgtcgatgacat
cgagctggatgcgtcttttattgtggatccaagcacgatcacggaggacgagccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCCAGCAGAATCATCTTCAACT 204 81 1065 Antisense
CAGGAAAGCACCACTTAGAGCACCC 350 207 1194 Antisense
GACAGCCGCCGAATCAGAATATCAA 482 367 1229 Antisense
CACACCATCTCAGCCATCAGAGGAA 475 195 1275 Antisense
AATGATGAAAATCCGGGCCCACATG 111 165 1329 Antisense
GAAGAGCGGCACAAGTGGGACACGA 331 337 1363 Antisense
GGAGCAATCTTTATCCCGATGGAGC 35 521 1411 Antisense
ACTCCCCAACGACATCGTTCTGAAG 324 97 1458 Antisense
GAGTATGATCCATCCGGCAATGAGA 198 399 1489 Antisense
CGAGCTGGATGCGTCTTTTATTGTG 493 249 1545 Antisense
GCACGATCACGGAGGACGAGCCAAC 574 315 1577 Antisense
Sequence Source Affymetrix Proprietary Database