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[176186_at]

Description Y119D3B.E /REP_DB=WormBase Gene ID /WP=CE23397 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 42      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.2
(-3)
A 		29.2
(3)
A 		5.7
(-2.4)
A 		8
(-1.9)
A 		26
B 5.7
(-3)
A 		8.7
(2)
A 		9.3
(3)
A 		8.5
(1.7)
A 		4
C 6.1
(-1.8)
A 		5.7
(-2.1)
A 		4.5
(-3)
A 		12.5
(3)
A 		8
avr 5
(-3) 		14.5
(3) 		6.5
(-2.1) 		9.7
(-0) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 10.9
(3)
A 		5.3
(-1.3)
A 		4.8
(-1.7)
A 		3.1
(-3)
A 		3.3
(-2.8)
A 		4.3
(-2.1)
A 		8
B 6.5
(-2.4)
A 		14
(-0.7)
A 		29.6
(3)
A 		9.6
(-1.7)
A 		4.7
(-2.9)
A 		4.1
(-3)
A 		26
C 2.8
(-3)
A 		7
(0.2)
A 		10.6
(3)
A 		7.6
(0.7)
A 		7.5
(0.6)
A 		3.2
(-2.7)
A 		8
avr 6.7
(-1.5) 		8.8
(-0.4) 		15
(3) 		6.8
(-1.4) 		5.2
(-2.3) 		3.9
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.2
(-3)
A 		6.3
(3)
A 		1.5
(-2.6)
A 		1.2
(-3)
A 		5
B 1.8
(-3)
A 		2.1
(1.5)
A 		2.2
(3)
A 		1.8
(-3)
A 		0
C 2
(1.8)
A 		1.6
(-3)
A 		1.6
(-3)
A 		2.1
(3)
A 		1
avr 1.7
(-3) 		3.3
(3) 		1.8
(-2.6) 		1.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2
(3)
A 		1.9
(2.5)
A 		1
(-2)
A 		0.8
(-3)
A 		1
(-2)
A 		1
(-2)
A 		1
B 2.3
(-2.2)
A 		4.7
(0.4)
A 		7.2
(3)
A 		2.6
(-1.8)
A 		1.9
(-2.6)
A 		1.5
(-3)
A 		6
C 1
(-3)
A 		2.1
(0.9)
A 		2.7
(3)
A 		1.5
(-1.2)
A 		2.4
(1.9)
A 		1.1
(-2.6)
A 		2
avr 1.8
(-1.5) 		2.9
(1.3) 		3.6
(3) 		1.6
(-2) 		1.8
(-1.5) 		1.2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19019
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.E NCBI
Target Description Y119D3B.E /REP_DB=WormBase Gene ID /WP=CE23397 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y119D3B.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y119D3B.E Y119D3B.E /REP_DB=WormBase Gene ID /WP=CE23397 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1238189-1238471(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176186_AT
atgtccagccaatttgatgtccgtggtattttgaggagaaaacaaggcgacaggtcgtcg
tttggcgccttggccagcatggtcatgtatgttgccctcttttgcgagggttttactgtg
gtcaccggagaggttctggagaacctgatgcgtccaattatcccccgccgggaactccga
catcgtctcttggaagaaggtttccgtctcctccgtgagctcattcatgatgggcgccag
ctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCAGCCAATTTGATGTCCGTG 186 49 13 Antisense
AGGCGACAGGTCGTCGTTTGGCGCC 579 51 57 Antisense
CGCCTTGGCCAGCATGGTCATGTAT 380 257 78 Antisense
GCATGGTCATGTATGTTGCCCTCTT 231 311 89 Antisense
TTTGCGAGGGTTTTACTGTGGTCAC 234 669 113 Antisense
GTGGTCACCGGAGAGGTTCTGGAGA 201 485 130 Antisense
AGAACCTGATGCGTCCAATTATCCC 206 73 152 Antisense
AACTCCGACATCGTCTCTTGGAAGA 610 139 185 Antisense
TCTTGGAAGAAGGTTTCCGTCTCCT 59 615 200 Antisense
TCCTCCGTGAGCTCATTCATGATGG 112 593 221 Antisense
CTCATTCATGATGGGCGCCAGCTCA 98 229 232 Antisense
Sequence Source Affymetrix Proprietary Database