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[176185_at]

Description Y119D3B.H /REP_DB=WormBase Gene ID /WP=CE23376 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 74      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 12.1
(-3)
A 		42.7
(0.8)
A 		59.8
(3)
M 		25.4
(-1.3)
A 		48
B 42.2
(3)
A 		37
(1.4)
P 		35.7
(1)
A 		23.1
(-3)
A 		19
C 53
(3)
P 		50.5
(2.5)
A 		22.3
(-3)
A 		43.1
(1.1)
A 		31
avr 35.8
(-0.5) 		43.4
(3) 		39.3
(1.1) 		30.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 14.1
(-3)
A 		16.9
(-2.3)
A 		27.4
(0.2)
A 		28.3
(0.5)
A 		38.7
(3)
A 		15.7
(-2.6)
A 		25
B 23.1
(1.3)
A 		20.9
(0.5)
A 		27.4
(3)
A 		22.8
(1.2)
A 		12.1
(-3)
A 		19.7
(-0)
A 		15
C 20.8
(-1.9)
A 		17.6
(-3)
A 		19.1
(-2.5)
A 		29.2
(1.2)
A 		23.4
(-0.9)
A 		34.3
(3)
A 		17
avr 19.3
(-2.4) 		18.5
(-3) 		24.6
(1.4) 		26.8
(3) 		24.7
(1.5) 		23.2
(0.4) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.4
(-2.6)
A 		9.3
(-0.2)
A 		15.6
(3)
M 		3.7
(-3)
A 		12
B 13.5
(3)
A 		9.1
(-0.1)
P 		8.3
(-0.6)
A 		4.9
(-3)
A 		9
C 17.6
(3)
P 		14.5
(1.2)
A 		7.8
(-2.7)
A 		7.3
(-3)
A 		10
avr 11.8
(3) 		11
(2.3) 		10.6
(1.9) 		5.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.6
(-3)
A 		6
(-0.8)
A 		6
(-0.8)
A 		7.2
(0)
A 		11.7
(3)
A 		3.8
(-2.2)
A 		9
B 8
(3)
A 		7
(1.1)
A 		6.6
(0.3)
A 		6
(-0.9)
A 		4.9
(-3)
A 		7.4
(1.8)
A 		3
C 7.7
(-0.5)
A 		5.4
(-2.5)
A 		4.9
(-3)
A 		5.9
(-2.1)
A 		7.6
(-0.5)
A 		11.5
(3)
A 		7
avr 6.1
(-2.2) 		6.1
(-2.2) 		5.8
(-3) 		6.4
(-1.4) 		8.1
(3) 		7.6
(1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19022
Sequence Type Exemplar sequence
Representative Public ID Y119D3B.H NCBI
Target Description Y119D3B.H /REP_DB=WormBase Gene ID /WP=CE23376 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064946 NCBI Caenorhabditis elegans Y119D3B.16 (Y119D3B.16) mRNA, complete cds. 11/11 None
SNAP00000002015 ENSEMBL cdna:SNAP chromosome:CEL140:III:1179943:1212009:-1 10/11 None
GENEFINDER00000002036 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1197436:1201989:-1 11/11 None
Y119D3B.16 ENSEMBL cdna:known chromosome:CEL140:III:1197436:1201998:-1 gene:Y119D3B.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1197435-1205682(-) 98.07 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119D3B.16
Entrez Gene 191044 Entrez gene
SwissProt Q95Y71 EMBL-EBI
WormBase CE38639 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584481_S_AT similar to mitochondrial ribosomal protein L45 cfa
CANINE:1584480_AT similar to mitochondrial ribosomal protein L45 cfa
CANINE_2:CFA.11350.1.A1_AT similar to mitochondrial ribosomal protein L45 cfa
CANINE_2:CFA.20898.1.S1_S_AT similar to mitochondrial ribosomal protein L45 cfa
DROSOPHILA_2:1637263_AT mitochondrial ribosomal protein L45 dm
DROSGENOME1:150385_AT mitochondrial ribosomal protein L45 dm
HG-U133B:224479_S_AT mitochondrial ribosomal protein L45 hs
HG-U133_PLUS_2:224479_S_AT mitochondrial ribosomal protein L45 hs
HU35KSUBA:AA248406_AT mitochondrial ribosomal protein L45 hs
HU35KSUBA:RC_AA164679_AT mitochondrial ribosomal protein L45 hs
U133_X3P:G13623270_3P_S_AT mitochondrial ribosomal protein L45 hs
HG-U95B:45578_S_AT mitochondrial ribosomal protein L45 hs
HG-U95C:65527_AT mitochondrial ribosomal protein L45 hs
MU11KSUBA:AA571738_S_AT mitochondrial ribosomal protein L45 mm
MU11KSUBA:AA617336_RC_AT mitochondrial ribosomal protein L45 mm
MG-U74AV2:95556_AT mitochondrial ribosomal protein L45 mm
MG-U74AV2:100886_F_AT mitochondrial ribosomal protein L45 mm
MOE430A:1423492_AT mitochondrial ribosomal protein L45 mm
MOUSE430A_2:1423492_AT mitochondrial ribosomal protein L45 mm
MOUSE430_2:1423492_AT mitochondrial ribosomal protein L45 mm
MU19KSUBC:TC37800_AT Mitochondrial ribosomal protein L45, mRNA (cDNA clone MGC:28209 IMAGE:3990098) mm
RG-U34A:RC_H31489_AT mitochondrial ribosomal protein L45 (predicted) rn
RG-U34C:RC_AI111725_AT mitochondrial ribosomal protein L45 (predicted) rn
RAE230A:1371790_AT mitochondrial ribosomal protein L45 (predicted) rn
RAT230_2:1371790_AT mitochondrial ribosomal protein L45 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK29715 Hypothetical protein Y119D3B.16 [Caenorhabditis elegans] ref|NP_497347.2| Y119D3B.16 [Caenorhabditis elegans] 0.0
blast AAK29716 Hypothetical protein Y119D3B.14 [Caenorhabditis elegans] ref|NP_497345.1| Y119D3B.14 [Caenorhabditis elegans] 0.0
blast CAE69118 Hypothetical protein CBG15144 [Caenorhabditis briggsae] 0.0
blast CAE69120 Hypothetical protein CBG15146 [Caenorhabditis briggsae] 1.0E-159
blast AAK29715 Hypothetical protein Y119D3B.16 [Caenorhabditis elegans] ref|NP_497347.2| Y119D3B.16 [Caenorhabditis elegans] 1.0E-153
blast Q95Y71 Putative mitochondrial 39S ribosomal protein L45 1.0E-153
blast Q95Y71 Putative mitochondrial 39S ribosomal protein L45 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR000640 EMBL-EBI Elongation factor G, C-terminal 2.8E-5
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 1.1E-25
Pfam IPR007379 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim44 1.0E-15
Pfam IPR005517 EMBL-EBI Elongation factor G, domain IV 0.0020
Pfam IPR007834 EMBL-EBI DSS1/SEM1 6.0E-11
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 7.0E-5
Pfam IPR007379 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim44 1.0E-15
Pfam IPR007379 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim44 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:176185_AT
gatatctatgtacaggctcaccgagcattggaacagagggataagacggcaatgtataaa
tatattaccgaatacgcgtttgcgctcaaattttcccacctttcccccaaaattccccct
aaaaccccgatttttttgcagaaaatgtggcccgacgttgaaaatggctccgttcgtttc
gagctcatttcagtgttggaaccgtctcgagtcgttgccgttcgatgtttcgataatccg
ccgaaatctggaaatgatattgcacagattactgtacgaatgcatacacgacagaagctt
gcagtttatgatcgatttggagggcttttattgggctccgaggacgaggagaaagatgtc
gtcgaatacgtagtttttgagaatcatattgccgtagtcgacggagaatggaggcttcac
ggtaaaatctatccgaaatggattgacgcgaaacagggaatggtcggtacacagatgctc
agcgcggagcaagtcgaaaagcagcacgctgaggcaaaagctcttccgttgagaactact
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCTATGTACAGGCTCACCGAG 107 425 1600 Antisense
ATATTACCGAATACGCGTTTGCGCT 447 17 1661 Antisense
AAAATGGCTCCGTTCGTTTCGAGCT 441 133 1760 Antisense
GTTTCGAGCTCATTTCAGTGTTGGA 347 451 1775 Antisense
TTCAGTGTTGGAACCGTCTCGAGTC 427 687 1788 Antisense
AGTCGTTGCCGTTCGATGTTTCGAT 411 61 1809 Antisense
GGAGGGCTTTTATTGGGCTCCGAGG 527 509 1918 Antisense
GAGAATCATATTGCCGTAGTCGACG 333 391 1978 Antisense
TCGGTACACAGATGCTCAGCGCGGA 455 605 2063 Antisense
GCACGCTGAGGCAAAAGCTCTTCCG 503 315 2103 Antisense
AAAGCTCTTCCGTTGAGAACTACTG 221 125 2116 Antisense
Sequence Source Affymetrix Proprietary Database