[Home] | [Total List]

[176184_at]

Description Y69A2AR.S /REP_DB=WormBase Gene ID /WP=CE26566 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_high_8_8 > 50      6grp_highest_nonorm > 71      6grp_total > 37      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 415.9
(3)
P 		303.6
(-0.7)
P 		263.9
(-1.9)
P 		231.3
(-3)
A 		185
B 350.2
(3)
P 		330
(2.3)
M 		293.3
(1.1)
P 		174.6
(-3)
P 		176
C 352.2
(1)
P 		323.1
(0.1)
P 		422.4
(3)
P 		216.5
(-3)
P 		206
avr 372.8
(3) 		318.9
(1) 		326.5
(1.3) 		207.5
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 351.9
(3)
P 		321.6
(1.6)
P 		223.1
(-3)
P 		332.2
(2.1)
P 		345.7
(2.7)
P 		346.9
(2.8)
P 		129
B 342.8
(3)
P 		305.8
(0.9)
P 		234
(-3)
P 		343.4
(3)
P 		259.1
(-1.6)
P 		266.4
(-1.2)
P 		109
C 337.5
(0.3)
P 		392.3
(3)
P 		294.5
(-1.9)
P 		343.8
(0.6)
P 		271.4
(-3)
P 		350.7
(0.9)
P 		121
avr 344.1
(3) 		339.9
(2.7) 		250.5
(-3) 		339.8
(2.7) 		292.1
(-0.3) 		321.3
(1.5) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 151.4
(3)
P 		65.9
(-1.4)
P 		69
(-1.2)
P 		33.9
(-3)
A 		118
B 111.7
(3)
P 		81.5
(0.6)
M 		68
(-0.5)
P 		37.2
(-3)
P 		75
C 116.6
(1.3)
P 		92.9
(0.1)
P 		147.2
(3)
P 		36.5
(-3)
P 		111
avr 126.6
(3) 		80.1
(-0.1) 		94.7
(0.9) 		35.9
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 64.9
(-1.5)
P 		114.4
(3)
P 		48.6
(-3)
P 		84.2
(0.2)
P 		104.3
(2.1)
P 		84.4
(0.3)
P 		66
B 119.3
(3)
P 		101.8
(1.3)
P 		56.8
(-3)
P 		91
(0.3)
P 		105.3
(1.7)
P 		99.3
(1.1)
P 		63
C 125.1
(3)
P 		119.7
(2.4)
P 		75
(-2.4)
P 		69.1
(-3)
P 		87.8
(-1)
P 		117.4
(2.2)
P 		56
avr 103.1
(2) 		112
(3) 		60.1
(-3) 		81.4
(-0.5) 		99.1
(1.5) 		100.4
(1.7) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19156
Sequence Type Exemplar sequence
Representative Public ID Y69A2AR.S NCBI
Target Description Y69A2AR.S /REP_DB=WormBase Gene ID /WP=CE26566 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067815(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067815 NCBI Caenorhabditis elegans Y69A2AR.16 (Y69A2AR.16) mRNA, complete cds. 10/11 A 
GENEFINDER00000018842 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2522342:2530105:1 10/11 None
Y69A2AR.16 ENSEMBL cdna:known chromosome:CEL140:IV:2504325:2530286:1 gene:Y69A2AR.16 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2518861-2528578(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.16
Entrez Gene 177039 Entrez gene
SwissProt Q95XI7 EMBL-EBI
WormBase CE27512 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258594_AT exportin-related at
CANINE:1589209_AT similar to Exportin-4 (Exp4) cfa
CANINE_2:CFA.12747.1.A1_S_AT similar to Exportin-4 (Exp4) cfa
CANINE_2:CFAAFFX.11709.1.S1_AT similar to Exportin-4 (Exp4) cfa
CHICKEN:GGA.13846.1.S1_S_AT exportin 4 gga
CHICKEN:GGAAFFX.10980.1.S1_S_AT exportin 4 gga
CHICKEN:GGAAFFX.11418.1.S1_AT exportin 4 gga
HG-FOCUS:218479_S_AT exportin 4 hs
HG-U133A:218479_S_AT exportin 4 hs
HG-U133_PLUS_2:218479_S_AT exportin 4 hs
HG-U133A_2:218479_S_AT exportin 4 hs
HU35KSUBB:RC_N49740_AT exportin 4 hs
HU35KSUBC:RC_AA418037_AT exportin 4 hs
U133_X3P:G11967998_3P_A_AT exportin 4 hs
U133_X3P:HS.117102.0.S2_3P_AT exportin 4 hs
HG-U133_PLUS_2:222649_AT exportin 4 hs
HG-U133B:222649_AT exportin 4 hs
HG-U95C:48741_AT exportin 4 hs
HG-U95C:61200_AT exportin 4 hs
HG-U95D:75909_AT exportin 4 hs
HG-U95D:85581_AT exportin 4 hs
HG-U133_PLUS_2:237243_AT Exportin 4 hs
HG-U133B:237243_AT Exportin 4 hs
HG-U95B:48319_AT Exportin 4 hs
HU35KSUBC:RC_AA279504_AT Exportin 4 hs
U133_X3P:HS.88629.0.A1_3P_AT Exportin 4 hs
MOUSE430A_2:1421054_AT exportin 4 mm
MOE430A:1421054_AT exportin 4 mm
MOUSE430_2:1421054_AT exportin 4 mm
MOE430A:1421055_AT exportin 4 mm
MOUSE430A_2:1421055_AT exportin 4 mm
MOUSE430_2:1421055_AT exportin 4 mm
MOE430B:1430797_AT exportin 4 mm
MOUSE430_2:1430797_AT exportin 4 mm
MOE430B:1442528_AT exportin 4 mm
MOUSE430_2:1442528_AT exportin 4 mm
MG-U74BV2:112721_AT Exportin 4 (Xpo4), mRNA mm
MOE430B:1440663_AT Exportin 4 (Xpo4), mRNA mm
MOUSE430_2:1440663_AT Exportin 4 (Xpo4), mRNA mm
MOE430B:1456396_AT Exportin 4 (Xpo4), mRNA mm
MOUSE430_2:1456396_AT Exportin 4 (Xpo4), mRNA mm
MU19KSUBC:TC38183_AT Exportin 4 (Xpo4), mRNA mm
MU19KSUBC:TC41187_AT Exportin 4 (Xpo4), mRNA mm
RG-U34C:RC_AI170652_AT exportin 4 (predicted) rn
RG-U34C:RC_AI072630_AT exportin 4 (predicted) rn
RG-U34C:RC_AI136233_S_AT exportin 4 (predicted) rn
RAE230B:1383296_A_AT exportin 4 (predicted) rn
RAT230_2:1383296_A_AT exportin 4 (predicted) rn
RAE230B:1385864_AT exportin 4 (predicted) rn
RAT230_2:1385864_AT exportin 4 (predicted) rn
RAE230B:1385428_AT exportin 4 (predicted) rn
RAT230_2:1385428_AT exportin 4 (predicted) rn
RAE230B:1396681_AT Exportin 4 (predicted) rn
RAT230_2:1396681_AT Exportin 4 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68560 Hypothetical protein Y69A2AR.16 [Caenorhabditis elegans] ref|NP_500216.1| Y69A2AR.16 [Caenorhabditis elegans] 0.0
blast CAE74685 Hypothetical protein CBG22497 [Caenorhabditis briggsae] 0.0
blast NP_071904 exportin 4 [Homo sapiens] 1.0E-59
blast XP_214191 PREDICTED: similar to exportin 4 [Rattus norvegicus] 2.0E-36
Sequence
Target Sequence 
>C. ELEGANS:176184_AT
gagtgctccaaatgccagaagtcgcgttgaaattctttcgtttaatcttgtatctcgtcg
aattctcgccagaatctctcgccgaaatgtccgatcagttgatgtcatcgttgtgccagt
gcattcggctcggcatgactggacaattcggaatggaaatcacatcaacatcactggaat
ctctgacggaagttgttcttcatttcggtagcccggcgaataaaggaagatgtacacaga
atttggcattccttttcaaggaaatgttgccgacggtcttcgaaacgtgcctatcaaaca
catgtgaaaacagtatctacgcggaatcgtgctcggcactctatgctctaatcgctttcg
aacgctcattcttcgatgaatatgtgaatgaacttttctcgaagaaatcgaatcaacaag
cacgtcaagtactcgaagctgcatttacagagcttatggaagttaatccagaacctggaa
atcgacgtggaaggtgcagatttttttcgtcgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGCTCCAAATGCCAGAAGTCGC 275 401 1307 Antisense
CTTGTATCTCGTCGAATTCTCGCCA 635 217 1353 Antisense
ATCTCTCGCCGAAATGTCCGATCAG 453 33 1380 Antisense
TTGATGTCATCGTTGTGCCAGTGCA 37 707 1405 Antisense
CGGCTCGGCATGACTGGACAATTCG 50 243 1432 Antisense
GAAGTTGTTCTTCATTTCGGTAGCC 16 337 1495 Antisense
GGAAATGTTGCCGACGGTCTTCGAA 163 527 1566 Antisense
GGTCTTCGAAACGTGCCTATCAAAC 446 503 1581 Antisense
AGTATCTACGCGGAATCGTGCTCGG 670 61 1618 Antisense
CACTCTATGCTCTAATCGCTTTCGA 249 197 1643 Antisense
AAGGTGCAGATTTTTTTCGTCGCCG 652 159 1797 Antisense
Sequence Source Affymetrix Proprietary Database